DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG16903 and ccnt2a

DIOPT Version :9

Sequence 1:NP_569980.1 Gene:CG16903 / 31178 FlyBaseID:FBgn0040394 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001180310.1 Gene:ccnt2a / 327568 ZFINID:ZDB-GENE-030131-5779 Length:693 Species:Danio rerio


Alignment Length:602 Identity:126/602 - (20%)
Similarity:211/602 - (35%) Gaps:166/602 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 VAAAQADANKPIYPRLFNRIVLTLENSLIPEGKIDVTPSSQDGLDHETEKDLRILGCELIQTAGI 127
            :||.:..::|..:.|                .:::.|||.:.|::.:.|...|.....|||..|.
Zfish     1 MAACRGSSSKWFFTR----------------EQLETTPSRRCGVEPDRELSYRQQAANLIQDMGQ 49

  Fly   128 LLRLPQVAMATGQVLFQRFFYSKSFVRHNMETVAMSCVCLASKIEEAPRRIRDVINVFHHIKQVR 192
            .|.:.|:.:.|..|...||:...||.:.:...::.:.:.||:|:||.||::..||.|.|      
Zfish    50 RLNVSQLTINTAIVYMHRFYMYHSFTKFHRNIISPTTLFLAAKVEEQPRKLEHVIKVAH------ 108

  Fly   193 AQKEISPMVLDPY----------YTNLKMQVIKAERRVLKELGFCVHVKHPHKLIVMYLQVLQYE 247
                   ..|:|.          |.....:::..|..||:.|||.:.::|||..:|...|:::..
Zfish   109 -------ACLNPQEPPLDTKSNAYLQQAQELVILETIVLQTLGFEITIEHPHTDVVKCSQLVRAS 166

  Fly   248 KHEKLMQLSWNFMNDSLRTDVF-MRYTPEAIACACIYLSARKLNIPLPNSPP----WFGIFRVPM 307
            |  .|.|.|:....:||....| :::.|..|||.||:|:.:..|..:|.|..    |..:.....
Zfish   167 K--DLAQTSYFMATNSLHLTTFCLQHKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDNSVT 229

  Fly   308 ADITDICYRVMELYMRSKPVVEKLEAAVDELKK-RYIDARNKTKEAN------------------ 353
            .::.|      ||......::||..:.:..::. |...|..|.|..|                  
Zfish   230 LELLD------ELTHEFLQILEKTPSRLKRIRNWRATQAAKKPKSDNQGSDSSSLAGSSLTQDPS 288

  Fly   354 ---TPPAVITVDR-NNGSHNAWGGFIQRAIPLPLPSEKSPQKDSRSRSRSRTRTHSRTPRSRSPR 414
               |.|.|.|... :.||         .:.|:.|....|......|.:..:..:::.|..|..|:
Zfish   289 LMDTLPGVSTSTAFSKGS---------TSFPVCLSGNSSSSLSLDSIANMQGTSYTYTAPSDWPQ 344

  Fly   415 SRSPSRERTKK-------THRSRSSRSRSRSPPKHKKKSRHYSRSPTRSNSPHS----------- 461
            .:..|...:.|       .|..|..:|...:|.||:.|....::....:..||:           
Zfish   345 DQLRSDPYSVKQLPSHSSMHPQRPDKSADLNPTKHEHKVSGGTKHQATTYPPHAAPTQKMSLDKY 409

  Fly   462 --KH--------RKSKSSRERSEYYSKKDRSGNPGSSNNLGDG-------------------DKY 497
              ||        ||.:.....:|.|....::.:.....:|..|                   ||.
Zfish   410 REKHAAELAVQKRKQEQQNVETEVYGATTQTDHRKHLPHLSHGQQGAGVTTASPLKIKLPGQDKI 474

  Fly   498 RN---------------SVSNSGKHS------RYSSSSSRRNSGGGGDGRSGGGGGGGGGGNGNH 541
            ::               |.|..|..|      :...||.|.:|...|..:|            .|
Zfish   475 QDKCEKGSSLKLRLPVPSQSEKGGSSKEELKMKIKVSSERHSSSDEGAAKS------------KH 527

  Fly   542 GSR--GGHKHRDGDRSR 556
            .|.  ...||||....|
Zfish   528 SSPLVSKEKHRDHSAHR 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16903NP_569980.1 CYCLIN 114..203 CDD:238003 24/88 (27%)
CYCLIN 235..321 CDD:214641 22/90 (24%)
ccnt2aNP_001180310.1 Cyclin_N 12..148 CDD:278560 39/164 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5333
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1437076at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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