DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16903 and mcs2

DIOPT Version :10

Sequence 1:NP_569980.1 Gene:CG16903 / 31178 FlyBaseID:FBgn0040394 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_595776.1 Gene:mcs2 / 2540555 PomBaseID:SPBP16F5.02 Length:322 Species:Schizosaccharomyces pombe


Alignment Length:245 Identity:49/245 - (20%)
Similarity:100/245 - (40%) Gaps:70/245 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 FNRIV-------LTLENSLIPEGKIDVTPSSQDGLDHETEKDLRILGCELIQTAGI--LLRLPQV 134
            |..||       |:|:|.   |..::|.|.:.     ..|::|.::.....|...:  .|.||..
pombe    33 FTNIVRERMLEELSLQNK---EASLEVLPPTL-----TVEEELELVNYYSFQLNALSSALSLPTH 89

  Fly   135 AMATGQVLFQRFFYSKSFVRHNMETVAMSCVCLASKIEEAPRRIRDVINVFHHIKQVRAQKEISP 199
            ..:|..:.|:||:...|.:.::.:.::.:.:.||:|..:            |:|.          
pombe    90 IRSTAILFFKRFYLINSVMEYSPKIISFTSLFLATKCND------------HYIS---------- 132

  Fly   200 MVLDPYYTNLKM----QVIKAERRVLKELGFCVHVKHPHKLIVMYLQVLQ-----------YEKH 249
              ::.:..|:..    :|::.|..|.:.|.:.::|..|.:.:..:|...|           ||.|
pombe   133 --IEQFCKNMPKTTPEEVLEYEFNVCQSLKWDLYVWLPFRPLQGFLLDCQTVLPKVAVEKFYECH 195

  Fly   250 EKLMQLSWNFMNDSLRTDVFMRYTPEAIACACI----------YLSARKL 289
            :    ||..|:.::|.:|::..::|..||...|          |:.|:|:
pombe   196 D----LSKKFLIETLHSDIYFLHSPSIIALGAIYHTNPTICLQYIEAKKI 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16903NP_569980.1 CYCLIN_CCNL1_rpt1 104..227 CDD:410292 21/128 (16%)
CYCLIN_CCNL_rpt2 232..323 CDD:410236 18/79 (23%)
SDP_N <440..>482 CDD:463517
mcs2NP_595776.1 ccl1 6..307 CDD:129660 49/245 (20%)
Blue background indicates that the domain is not in the aligned region.

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