DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG16903 and ccnl1

DIOPT Version :9

Sequence 1:NP_569980.1 Gene:CG16903 / 31178 FlyBaseID:FBgn0040394 Length:560 Species:Drosophila melanogaster
Sequence 2:XP_012818005.1 Gene:ccnl1 / 100038120 XenbaseID:XB-GENE-492287 Length:495 Species:Xenopus tropicalis


Alignment Length:523 Identity:240/523 - (45%)
Similarity:303/523 - (57%) Gaps:97/523 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 AAPGADAAGGDAGGVAAAQADANKPIYPRLFNRIVLTLENSLIPEGKIDVTPSSQDGLDHETEKD 113
            :||.|.....|  |:.         |..||::.:.||::.|||||.::..|||..||||..:|.|
 Frog     8 SAPSAPIRSAD--GIL---------IGDRLYSEVYLTIDCSLIPEERLSPTPSMSDGLDLNSETD 61

  Fly   114 LRILGCELIQTAGILLRLPQVAMATGQVLFQRFFYSKSFVRHNMETVAMSCVCLASKIEEAPRRI 178
            ||||||||||:|||||||||||:|||||||.|||||||||:|:.|.|||:|:.||||||||||||
 Frog    62 LRILGCELIQSAGILLRLPQVALATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRI 126

  Fly   179 RDVINVFHHIKQVRAQKEISPMVLDPYYTNLKMQVIKAERRVLKELGFCVHVKHPHKLIVMYLQV 243
            |||||||||::|:|.::...|::||..|.|.|..|||||||:|||||||||||||||:|||||||
 Frog   127 RDVINVFHHLRQLRTKRTPVPLILDQSYINTKNHVIKAERRILKELGFCVHVKHPHKIIVMYLQV 191

  Fly   244 LQYEKHEKLMQLSWNFMNDSLRTDVFMRYTPEAIACACIYLSARKLNIPLPNSPPWFGIFRVPMA 308
            |:.|:::.|:|.:||:|||.|||:||:|:..|.||||||||:||.|.:||||.|.||.:|.....
 Frog   192 LECERNQTLVQTAWNYMNDCLRTNVFVRFEAETIACACIYLAARALQLPLPNRPHWFLLFGATEE 256

  Fly   309 DITDICYRVMELYMRSKPVVEKLEAAVDELKKRYIDARNKTKEANT--PPAVITVDRNNGSHNAW 371
            :|.|||...:.||.|.||..|.||..|::.|....:|:.|.|..|.  .||::::          
 Frog   257 NIQDICITTLRLYTRKKPNYEFLEKEVEKRKVALQEAKLKAKGLNPDGTPALLSI---------- 311

  Fly   372 GGF-----------------------IQRAIPLPLPSEKSP-------QKDSRSRSRSRTRTHSR 406
            |||                       |:|.|. ...|.|||       .|.|||.||||:||.||
 Frog   312 GGFSPASKPSSPRDVKTEDKSPSSAKIKREID-DKQSSKSPYNGLRKENKRSRSISRSRSRTKSR 375

  Fly   407 TPRSRSPRSRSPSRERTKKTHRSRS---SRSRSRSPPKH--------KKKSR------HYSRSPT 454
            : ||.|||....:|.....|:.|||   |||.|.||.:|        |.|.|      .:.....
 Frog   376 S-RSHSPRRHYNNRRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHMKLKHRVEDLRGRHGHKRK 439

  Fly   455 RSNSPH---------SKHRKS----KSSRERSEYYSKKDRSGNPGSSNNLGDGDKYRNSVSNSGK 506
            :||||.         .|||..    :..||||..:.:..:|.:..||:            |..|:
 Frog   440 KSNSPSKPREHVELAKKHRHEHGHHRERRERSRSFERSHKSKHHSSSH------------SGHGR 492

  Fly   507 HSR 509
            |.|
 Frog   493 HRR 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16903NP_569980.1 CYCLIN 114..203 CDD:238003 67/88 (76%)
CYCLIN 235..321 CDD:214641 47/85 (55%)
ccnl1XP_012818005.1 CCL1 54..>256 CDD:227640 140/201 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 180 1.000 Domainoid score I3440
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 389 1.000 Inparanoid score I1957
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002258
OrthoInspector 1 1.000 - - otm48266
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1832
SonicParanoid 1 1.000 - - X1491
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.080

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