Protein Alignment Rtca and Rtca

DIOPT Version :9

• Sequence 1: NP_001284801.1
• Gene: Rtca / 31175
• FlyBaseID: FBgn0025630
• Length: 361
• Species: Drosophila melanogaster
• Sequence 2: NP_001004227.1
• Gene: Rtca / 295395
• RGDID: 1303111
• Length: 366
• Species: Rattus norvegicus
• Alignment Length: 368
• Identity: 141/368 - (38%)
• Similarity: 223/368 - (60%)
• Gaps: 15/368 - (4%)

  Fly     1 MDAEKMLEIDGSYLEGGGQALRNALSLSCILGKPVRVVKIRASRPSPGLSHQHLHGLNLLRDITN 65
            |:.:: :|:||..:|||||.||.:.:|||:||.|:||.||||.|.:|||..|||.||.::||:.:
  Rat     1 MEGQR-VEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVRDLCD 64

  Fly    66 ADVVGNYLLSSTVEFTPRTILDNTYRVETHTAASITLIYQMALPVLLFAGRPSRLIVSGGTNVDF 130
            ..:.|..:.|:.:.|||..|....:..:|.||.|:.|:.|:::|.:|||..||.|.:.||||.:.
  Rat    65 GHLEGAEIGSTEITFTPEKIRGGVHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGTNAEM 129

  Fly   131 APPVEYMQEVLLPNLKHFGVSFDLKVQRYGFYPRGQGRCQLDVQPVTKLNSGKLVAFGRIKSVSG 195
            ||.::|...|..|..:.||.:|:..::..|:||:|.|...:.:.||.:|:...|...|.:..:.|
  Rat   130 APQIDYTMMVFKPIAEKFGFTFNCDIKTRGYYPKGGGEVIVRMSPVKRLDPINLTDRGSVTKIYG 194

  Fly   196 VAYCAGRLPVNIAIDMQQTA----QREIHRLWPSQQCSIEPIKHSRQKAFHNGAGILMTVNTTSD 256
            .|:.||.||:.:|.||...|    ::||..|:    .||:|::.:|.:||.||:||::...|::.
  Rat   195 RAFVAGVLPLKVAKDMAAAAVRCLRKEIRDLY----VSIQPVQEARDQAFGNGSGIIIVAETSTG 255

  Fly   257 VVLGASALGKKRIDGHVLGSEASCQLGDYMRKQVCVDDYMQDQLIIYMALAVGRSTMRTGKLTNH 321
            .:...|:|||:.::...:|.||:..|...:|....||:|:||||||:||||.|.|.::||.:|.|
  Rat   256 CLFAGSSLGKRGVNADKVGIEAAEMLLANLRHGGTVDEYLQDQLIIFMALASGISRIKTGPVTLH 320

  Fly   322 TRTAINVAEQMTGVKFDVAMEPGGQ------MLVSCKGLGHVN 358
            |:|||:.|||:...||.|......:      .::.|:|:|..|
  Rat   321 TQTAIHFAEQLAKAKFTVKKSEEEEDASKDTYIIECEGVGMAN 363

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtca	NP_001284801.1	RNA_3prim_cycl	7..338	CDD:274563	134/334 (40%)
		RNA_Cyclase_Class_II	9..341	CDD:238446	135/335 (40%)
Rtca	NP_001004227.1	RNA_Cyclase_Class_II	8..340	CDD:238446	135/335 (40%)
		RTC	12..338	CDD:279479	131/329 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166335011
Domainoid	1	1.000	252	1.000	Domainoid score	I2026
eggNOG	1	0.900	-	-		E1_COG0430
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H2766
Inparanoid	1	1.050	263	1.000	Inparanoid score	I3008
OMA	1	1.010	-	-		QHG60643
OrthoDB	1	1.010	-	-		D1151685at2759
OrthoFinder	1	1.000	-	-		FOG0007129
OrthoInspector	1	1.000	-	-		oto98505
orthoMCL	1	0.900	-	-		OOG6_103060
Panther	1	1.100	-	-	LDO	PTHR11096
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X5996
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	15	14.770