Protein Alignment Rtca and rtca

DIOPT Version :10

• Sequence 1: NP_569977.1
• Gene: Rtca / 31175
• FlyBaseID: FBgn0025630
• Length: 361
• Species: Drosophila melanogaster
• Sequence 2: NP_001120256.2
• Gene: rtca / 100145308
• XenbaseID: XB-GENE-951684
• Length: 365
• Species: Xenopus tropicalis
• Alignment Length: 355
• Identity: 146/355 - (41%)
• Similarity: 210/355 - (59%)
• Gaps: 3/355 - (0%)

  Fly     7 LEIDGSYLEGGGQALRNALSLSCILGKPVRVVKIRASRPSPGLSHQHLHGLNLLRDITNADVVGN 71
            ::||||.:|||||.||...:|.|:|||.:.|.:|||.|.:|||..|||.||..:||:....:|..
 Frog     8 VDIDGSIMEGGGQILRICTALGCLLGKRLHVHQIRAGRSTPGLRPQHLSGLETVRDLCGGKLVKA 72

  Fly    72 YLLSSTVEFTPRTILDNTYRVETHTAASITLIYQMALPVLLFAGRPSRLIVSGGTNVDFAPPVEY 136
            .:.|:.:||||..|...|...:|.||.|:.|:.|::||.:|||..||.||:.||||.:.||.::|
 Frog    73 EIGSTEIEFTPGKIKGGTLTADTKTAGSVCLLLQVSLPCVLFAESPSELILKGGTNAEMAPQIDY 137

  Fly   137 MQEVLLPNLKHFGVSFDLKVQRYGFYPRGQGRCQLDVQPVTKLNSGKLVAFGRIKSVSGVAYCAG 201
            ...|..|..:.|....|..::|.|:||||.|..|:.|.||..||...||..|.:..:.|.::.||
 Frog   138 TTMVFKPIAERFNFKLDYDIKRRGYYPRGGGEIQVKVSPVKHLNPINLVDRGSVTKIYGRSFVAG 202

  Fly   202 RLPVNIAIDMQQTAQREIHRLWPSQQCSIEPIKHSRQKAFHNGAGILMTVNTTSDVVLGASALGK 266
            .||..:|.||...|.|.|.|.......:|:.::..:::|..||:||::...|::..:...|||||
 Frog   203 VLPYRMAKDMASAAVRCIRRELRDLYINIQAVQEHKERAVANGSGIIIVAETSTGCIFAGSALGK 267

  Fly   267 KRIDGHVLGSEASCQLGDYMRKQVCVDDYMQDQLIIYMALAVGRSTMRTGKLTNHTRTAINVAEQ 331
            |.:....:|.||:..|...:|...|||:|:||||||:||||.|.|.::||.||.||:|||:..||
 Frog   268 KGVTSDQVGVEAAEILLRNLRHGGCVDEYLQDQLIIFMALADGISQIKTGPLTLHTQTAIHFVEQ 332

  Fly   332 MTGVKFDV--AMEPGGQM-LVSCKGLGHVN 358
            ::..||.|  ..|..... ::.|:|:|..|
 Frog   333 LSKAKFTVKKCEEVNTDCNIIECQGIGFRN 362

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rtca	NP_569977.1	RNA_3prim_cycl	7..338	CDD:274563	139/330 (42%)
rtca	NP_001120256.2	RTC	14..340	CDD:460079	136/325 (42%)