DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4325 and traip

DIOPT Version :9

Sequence 1:NP_001259169.1 Gene:CG4325 / 31167 FlyBaseID:FBgn0026878 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_001017318.1 Gene:traip / 550072 XenbaseID:XB-GENE-922321 Length:463 Species:Xenopus tropicalis


Alignment Length:46 Identity:23/46 - (50%)
Similarity:30/46 - (65%) Gaps:2/46 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 CTICSERFRTSDNIQAGSCGHAFHEDCLDHWRKQS--RTCPICRSQ 51
            |||||:.|..|.::.|.:|||.||::||..|...:  ||||.||.|
 Frog     7 CTICSDFFDNSRDVAAVTCGHTFHQECLLQWFHSAPHRTCPQCRIQ 52

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4325NP_001259169.1 zf-RING_2 8..49 CDD:290367 20/42 (48%)
Prefoldin 112..>151 CDD:298833
traipNP_001017318.1 RING-H2_TRAIP 6..50 CDD:319394 20/42 (48%)
RING-H2 finger (C3H2C3-type) 7..49 CDD:319394 20/41 (49%)
Smc <69..>275 CDD:224117
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D581741at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46569
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

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