DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actn and Smtnl2

DIOPT Version :10

Sequence 1:NP_477485.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster
Sequence 2:NP_001177927.1 Gene:Smtnl2 / 679629 RGDID:1585960 Length:456 Species:Rattus norvegicus


Alignment Length:184 Identity:57/184 - (30%)
Similarity:86/184 - (46%) Gaps:34/184 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 EVISGETLPKPDRGKMRFHKIANVNKAL-----DFIASKGVHLVSIGAEEIVDGNLKMTLGMIWT 132
            |::..:|||:....:.|        |||     ...||||            .|..:..|....:
  Rat   295 ELVRSQTLPRTSGAQAR--------KALFEKWEQDTASKG------------KGETRAKLKRSQS 339

  Fly   133 IILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYA 197
                |.:...|    :.|:.||.||:.||..|::|::|||..|:.||:|||||:|...||..||.
  Rat   340 ----FGVASAS----SIKQILLEWCRSKTVGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYN 396

  Fly   198 KLSKDNPLENLNTAFDVAEKYLDIPRMLDPDD-LINTPKPDERAIMTYVSCYYH 250
            .||.....:|...||.:||...:..|:::.:| ::...|||...:.|||...|:
  Rat   397 ALSPTQRQKNFELAFTMAENLANCERLIEVEDMMVMGRKPDPMCVFTYVQSLYN 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActnNP_477485.1 CH_ACTN_rpt1 31..135 CDD:409063 14/66 (21%)
CH_ACTN_rpt2 139..252 CDD:409065 42/113 (37%)
SPEC 302..525 CDD:238103
SPEC 420..647 CDD:238103
SPEC 538..760 CDD:238103
EFh 775..842 CDD:238008
EFhand_Ca_insen 847..913 CDD:430177
Smtnl2NP_001177927.1 PRK09039 <8..>84 CDD:181619
CH_SMTNL2 347..453 CDD:409110 41/104 (39%)
Blue background indicates that the domain is not in the aligned region.

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