DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actn and smtnb

DIOPT Version :10

Sequence 1:NP_477485.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster
Sequence 2:XP_021332366.1 Gene:smtnb / 664685 ZFINID:ZDB-GENE-070912-2 Length:910 Species:Danio rerio


Alignment Length:228 Identity:69/228 - (30%)
Similarity:104/228 - (45%) Gaps:52/228 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 QKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLL-------LEVISGETLPKPDRGKMRFHKI 93
            |.|:::....:..||.|:..|..:...|:..:...|       .|::..:||||....:.|    
Zfish   694 QTKSYSYSSTTSTRKVGSVFDREDNTSRSSSRSSALDRRQAERSELMRAQTLPKTSAAQAR---- 754

  Fly    94 ANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDIS-VEEMTA-------- 149
                ||:            |...|...|||              ||..:: |:..|:        
Zfish   755 ----KAM------------IEKLENTSGNL--------------AIAQVNRVQRSTSFGVPNANS 789

  Fly   150 -KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFD 213
             |:.||.||:.||..|:||::|||..|:.||:|||||:|...|:..||:.||..|..:|..|||.
Zfish   790 IKQMLLDWCRSKTRSYENVDIQNFSSSWSDGMAFCALVHNFFPEAFDYSSLSPTNRRQNFETAFS 854

  Fly   214 VAEKYLDIPRMLDPDD-LINTPKPDERAIMTYV 245
            .||.|.:...:|:.:| :|...|||.:.:.|||
Zfish   855 TAEAYANCMPLLEVEDMMIMGKKPDSKCVFTYV 887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActnNP_477485.1 CH_ACTN_rpt1 31..135 CDD:409063 21/105 (20%)
CH_ACTN_rpt2 139..252 CDD:409065 47/118 (40%)
SPEC 302..525 CDD:238103
SPEC 420..647 CDD:238103
SPEC 538..760 CDD:238103
EFh 775..842 CDD:238008
EFhand_Ca_insen 847..913 CDD:430177
smtnbXP_021332366.1 Smoothelin <10..39 CDD:463614
Smoothelin 73..120 CDD:463614
Smoothelin 553..602 CDD:463614
CH_SF 789..899 CDD:469584 44/99 (44%)
Blue background indicates that the domain is not in the aligned region.

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