DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actn and sptb

DIOPT Version :9

Sequence 1:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster
Sequence 2:XP_005158906.1 Gene:sptb / 58040 ZFINID:ZDB-GENE-000906-1 Length:2481 Species:Danio rerio


Alignment Length:1147 Identity:327/1147 - (28%)
Similarity:503/1147 - (43%) Gaps:315/1147 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DGYMEQEEEWEREGLLDPAWEKQQKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISG 77
            ||...|.:: |||.:        ||||||.|.||.|.:....|.::..|.|:|..|:.||||:||
Zfish   169 DGRFRQLQD-EREAV--------QKKTFTKWVNSILARVSCRISDLYLDLRDGRMLIKLLEVLSG 224

  Fly    78 ETLPKPDRGKMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI 142
            |.||||.:|:||.|.:.||:|||.|:..:.|||.::|:.:|||||.::.||:||||||||.||||
Zfish   225 ERLPKPTKGRMRIHCLENVDKALQFLKEQKVHLENMGSHDIVDGNHRLILGLIWTIILRFQIQDI 289

  Fly   143 SV-----------EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDY 196
            .|           |..:||:.||||||.|||.|.|:|:.||..|:|||:||.||||:|||||:||
Zfish   290 IVETGQADQTGRQETRSAKDALLLWCQMKTAGYPNINITNFTTSWKDGMAFNALIHKHRPDLVDY 354

  Fly   197 AKLSKDNPLENLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNV 261
            ..|.:.||..||..||:||||.|.:.::|||:|:. |..|||::|:|||..:||.|...:.:.  
Zfish   355 GNLKRSNPTHNLQQAFNVAEKKLGVTKLLDPEDVF-TENPDEKSIITYVVAFYHYFSKMKALA-- 416

  Fly   262 THVPEPTRQYTYVPNNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQ 326
                                ....||.|||....|.|:::|:||.|:||||.||.:|:..||:|:
Zfish   417 --------------------VEGKRIGKVLDQAIETEKMIEKYETLSSDLLTWIEQTIVVLNNRK 461

  Fly   327 ADNSLAGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISN 391
            ..|||.|||::|:.:.:||...|||:.::|..||....|:|:::|.:|:..|.|.||..||||:.
Zfish   462 LANSLTGVQQQLQAFNSYRTVEKPPKFQEKGNLEVLLFTIQSRMRANNQKVYTPKEGALVSDINK 526

  Fly   392 SWKGLELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELK 456
            :|:.||.||...|..|..|.:|.|:||.:|::|..||...|.|.. :.:.|.|||.....|..::
Zfish   527 AWERLEKAEYDRERVLRDELIRQEKLEQMARRFDRKAAMRETWLM-ENQRLVSQDNFGYDLPAVE 590

  Fly   457 ALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTA 521
            |.||||:|.|:|:||:::||:.:.|:::||.:..|||...::||...|...||.|..|.:.||..
Zfish   591 AAKKKHDAIETDIAAYEERVQALVALSKELESERYHDAKRIDARKDNILRLWDYLQELLKARRGR 655

  Fly   522 LDE---AERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHD------ 577
            ||:   .:||.:  ::||:         .:|:|..:..|:.......:.|::.|:|.|.      
Zfish   656 LDKNLTLQRIFQ--EMLHI---------ISWMDEMKGRLLSPDFGKHLLEVEDLLQKHSLVEADI 709

  Fly   578 --------------------------------------------------QFKATLGEADKEFNL 592
                                                              |.||.|.::.:.:|.
Zfish   710 AVQAERVKSANAAALKFANGDSYKPCDPQVIRDRVQHLDLCYQELCALAAQRKARLEQSRRLWNF 774

  Fly   593 IVNL------VREVESI---------------------------------VKQHQIPG------- 611
            :..:      :||.|.|                                 :||....|       
Zfish   775 LWEIAELESWIREREQIFSSLDYGKDLTSVLILQSKHSVFEDELAARRDNLKQVMDEGESMIQIK 839

  Fly   612 GLENPYTTLTANDMTRKWSDVRQLVPQRDQTL------------ANELR-------KQQNNE--- 654
            .|.:|......||:.|:|..:.:|...|.|.|            |::|:       :|.:::   
Zfish   840 HLGSPKVQQRMNDVQRQWQQLEELAAFRKQNLQDTQRFFQFQGDADDLKAWLVDAMRQMSSDDVG 904

  Fly   655 --------MLR--RQFAEKANIVGPWIERQMDAVTAIGMGL------QGSLED------QLHRLK 697
                    :|:  |...::|...|..|:.......|:...|      ||.|.|      :|..|.
Zfish   905 HDEYTTQRLLKKHRDLRDEAAKNGATIDALSKQANALPEELRNTPDIQGRLNDIRDMYIELLTLS 969

  Fly   698 EYEQ-------AVYAY-----------------------KPNIEELEKIHQAVQESMIFENRYTN 732
            :..|       |:|..                       ..|:|:||          |.:||.:.
Zfish   970 DLRQKKLDDTMALYTIFSETDACELWMGQKETWLVGLETPENLEDLE----------IVQNRLSI 1024

  Fly   733 YTMETLRVGWEQLLTSINRNINEVENQILTRDSKGISQEQ-------LNEFRSSFNHFDKNRTGR 790
            ...|   :|  .:.|.:: |:|:...|:  .||:....:|       ||:...:|....:::..|
Zfish  1025 LAQE---MG--NMQTRVD-NVNKAAKQL--EDSRHPQTKQVKDCQIRLNKRWEAFKAMVEDKKHR 1081

  Fly   791 ----LSPEEF-------------KSCLVSLGYSIGKDRQGDLDFQR--------ILAVVD----- 825
                ||...:             |:.::.....:|.|....:..||        :.|:.|     
Zfish  1082 VDSALSLHNYDLDCDETESWIKEKTRVIESTQDLGNDLAAVITIQRKLFGMERDLAAIQDKLDSL 1146

  Fly   826 -----------PNNTGYV-----HFDAFLDFMTRESTDTDTAEQVIDSFRILAADKPYILPDELR 874
                       |.|...:     ..||..|.:.|...|.:.:...:...:....|.     |:.:
Zfish  1147 RDEAQKLVKEHPENASDILARQEELDAAWDTLKRTLKDREDSLGEVSKLQTFLQDM-----DDFQ 1206

  Fly   875 RELPPDQAEYCIQRMPPYKGPNGVPGALDYMSFSTALYGETD 916
            ..|...|.....:.|     |:|:|.|...::...||..:.|
Zfish  1207 AWLFKSQKAVASEDM-----PDGLPEAEQLLNLHDALRHDMD 1243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 51/103 (50%)
CH_ACTN_rpt2 139..252 CDD:409065 65/123 (53%)
SPEC 302..525 CDD:238103 93/225 (41%)
SPEC 420..647 CDD:238103 74/343 (22%)
SPEC 538..760 CDD:238103 60/397 (15%)
EFh 775..842 CDD:238008 16/112 (14%)
EFhand_Ca_insen 847..913 CDD:400872 12/65 (18%)
sptbXP_005158906.1 CH 182..285 CDD:237981 54/110 (49%)
CH 306..409 CDD:237981 59/103 (57%)
Spectrin 434..544 CDD:278843 48/109 (44%)
Spectrin 554..656 CDD:278843 38/102 (37%)
SPEC 662..873 CDD:238103 33/221 (15%)
SPEC 774..980 CDD:238103 34/205 (17%)
SPEC 982..1191 CDD:238103 37/226 (16%)
SPEC 1088..1299 CDD:238103 26/166 (16%)
SPEC 1303..1512 CDD:238103
SPEC 1515..1723 CDD:238103
SPEC 1622..1830 CDD:238103
SPEC 1728..1940 CDD:238103
SPEC 1941..2162 CDD:238103
Spectrin 2156..>2210 CDD:278843
PH 2326..2433 CDD:278594
PH_beta_spectrin 2328..2433 CDD:269975
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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