DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actn and LOC558044

DIOPT Version :9

Sequence 1:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster
Sequence 2:NP_001093459.1 Gene:LOC558044 / 558044 -ID:- Length:2391 Species:Danio rerio


Alignment Length:1010 Identity:317/1010 - (31%)
Similarity:466/1010 - (46%) Gaps:254/1010 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DGYMEQEEEWEREGLLDPAWEKQQKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISG 77
            :|..:|.:: |||.:        ||||||.|.||||.:....|.::..|.|:|..|:.||||:||
Zfish    81 EGRFKQLQD-EREAV--------QKKTFTKWVNSHLGRVTCRIGDLYTDLRDGRMLIRLLEVLSG 136

  Fly    78 ETLPKPDRGKMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI 142
            |.||||.:|:||.|.:.||:|||.|:..:.|||.::|:.:|||||.::|||:||||||||.||||
Zfish   137 EQLPKPTKGRMRIHCLENVDKALQFLKEQKVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDI 201

  Fly   143 SV------EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSK 201
            ||      |:.:||:.||||||.|||.|.||||.||..|::|||||.|::|:||.||||:..|.:
Zfish   202 SVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRSDLIDFDNLKR 266

  Fly   202 DNPLENLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPE 266
            .|...||..||:||||.|.:.::|||:| :|..:|||::|:|||:.|||.|...:.:.       
Zfish   267 SNAHYNLQNAFNVAEKELGLTKLLDPED-VNVDQPDEKSIITYVATYYHYFSKMKALA------- 323

  Fly   267 PTRQYTYVPNNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSL 331
                           ....||.|||....|.::|:|:||.|||:||:||.:|:..||.||..|||
Zfish   324 ---------------VEGKRIGKVLDYAIEADQLIEKYETLASELLQWIEQTIVTLNDRQLANSL 373

  Fly   332 AGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNSWKGL 396
            :.||.:|:.:.|||...|||:..:|..||....|:|:|:|.:|:..|:|.|||.:|||:.:|:.|
Zfish   374 SAVQNQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERL 438

  Fly   397 ELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELKALKKK 461
            |.||...|..|..|.:|.|:||.||.:|..||...|.|. .:.:.|.|||....:|..::|..:|
Zfish   439 EKAEHERELALRNELIRQEKLEMLAARFDRKAAMRETWL-SENQRLVSQDNFGVELGAVEAATRK 502

  Fly   462 HEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTAL---- 522
            |||.|:|:.|:.:||..:.|:|:||....||:...|.||...:...|:.|..|...||..|    
Zfish   503 HEAIETDIQAYGERVAAVEAVARELEAEGYHEVRRVLARRDNVLRLWEYLKELLAARRERLMAHR 567

  Fly   523 --------------------------------------------------DEAERIL-------- 529
                                                              .:|||:.        
Zfish   568 DLQRLLQELSYIMEWMEDMKSRLQSQDSGKHLHDVEDLLQKHTLVEADISAQAERVKAVQATAKR 632

  Fly   530 -----------------EKIDIL---HLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEE------ 568
                             ||:|:|   :.|..:.||.....||.:|.  :..|:....||      
Zfish   633 FASNEQSYKPCDPALVEEKVDLLGRAYGELGQLAADRRVRLDDSRR--LWQFLWELGEEAAWIRE 695

  Fly   569 ----IQG------------LIQAHDQFKATLGEADKEFNLIVNLVREVESIVKQHQIPGGLENPY 617
                |.|            |:..|:.|:   .|....:..:.|.:...|::||:    |.:..|.
Zfish   696 QEQIISGGDYGKDLSSALHLLSKHEAFR---DEMAARYGPLGNSIAGGEALVKE----GHVGAPE 753

  Fly   618 TTLTANDMTRKWSDVRQLVPQRDQTLANELRKQQNNEMLR-RQFAEKANIVGPWIERQMDAVTAI 681
            .|....|:..:||.:.:         |::||:|..||.:. .||...||.:..||...:..|::.
Zfish   754 VTERIKDVRAQWSHLEE---------ASQLREQSLNESVAFHQFQTDANDMEAWILETLRQVSSQ 809

  Fly   682 GMG-------------------LQG--SLEDQLHRLKEYEQAVYAYKPNI-----------EELE 714
            .:|                   :|.  ||.|.||.........||:.|.:           ||||
Zfish   810 EVGHDEFSTQTLARKQREVEEEIQSHRSLIDSLHEQGSLLPEAYAHSPQVEGRLPAIEQRYEELE 874

  Fly   715 KI----HQAVQESMIFENRYTNYTMETLRVG----W----------------------------- 742
            .:    .||:..::.....::..:...|.||    |                             
Zfish   875 GLSSSWRQALDGALALYRMFSEASACQLWVGEKEQWLHNMEIPTKLEDLEVIQQRFDTLEPEMNT 939

  Fly   743 ------------EQLLTSINRN---INEVENQILTR--DSKGISQEQLNEFRSSFN----HFDKN 786
                        :|||.|.|||   |::.:||:..|  |.:.::.::.....|:.|    |.:.|
Zfish   940 LGGRISDVNQVAQQLLGSDNRNKDQIDQTQNQLNNRWSDFQSLANQRKQALESALNIQNYHLECN 1004

  Fly   787 RTGRLSPEEFKSCLVSLGYSIGKDRQGDLDFQRIL 821
            .......|:.|  ::....|:|.|..|.:..||.|
Zfish  1005 EIKSWMKEKTK--VIESTQSLGNDLAGVMALQRKL 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 53/103 (51%)
CH_ACTN_rpt2 139..252 CDD:409065 65/118 (55%)
SPEC 302..525 CDD:238103 92/276 (33%)
SPEC 420..647 CDD:238103 70/330 (21%)
SPEC 538..760 CDD:238103 67/328 (20%)
EFh 775..842 CDD:238008 13/51 (25%)
EFhand_Ca_insen 847..913 CDD:400872
LOC558044NP_001093459.1 CH 94..197 CDD:237981 56/110 (51%)
CH 213..316 CDD:237981 58/103 (56%)
Spectrin 341..451 CDD:278843 51/109 (47%)
SPEC 465..563 CDD:197544 34/98 (35%)
SPEC 568..782 CDD:238103 37/231 (16%)
SPEC 681..888 CDD:238103 48/222 (22%)
SPEC 785..994 CDD:238103 40/208 (19%)
SPEC 997..1201 CDD:238103 11/43 (26%)
SPEC 1209..1419 CDD:238103
SPEC 1420..1635 CDD:238103
SPEC 1636..1848 CDD:238103
SPEC 1849..2058 CDD:238103
SPEC 2065..>2123 CDD:197544
PH_beta_spectrin 2230..2333 CDD:269975
PH 2230..2333 CDD:278594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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