DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actn and Sptb

DIOPT Version :9

Sequence 1:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster
Sequence 2:XP_006240306.1 Gene:Sptb / 314251 RGDID:1303243 Length:2329 Species:Rattus norvegicus


Alignment Length:838 Identity:288/838 - (34%)
Similarity:433/838 - (51%) Gaps:125/838 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 WEREGLLDPAWEKQ--QKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISGETLPKPD 84
            :||..:...|.|::  ||||||.|.||||.:....|.::.:|.|:|..|:.||||:|||.||:|.
  Rat    40 FERSRIKALADEREVVQKKTFTKWVNSHLARVSCRISDLYKDLRDGRMLIKLLEVLSGEMLPRPT 104

  Fly    85 RGKMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV----- 144
            :||||.|.:.||:|||.|:..:.|||.::|:.:|||||.::.||:||||||||.||||.|     
  Rat   105 KGKMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLVLGLIWTIILRFQIQDIVVQTQEG 169

  Fly   145 -EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENL 208
             |..:||:.||||||.|||.|..|||.||..|:||||||.||||:|||||||:.||...|...||
  Rat   170 RETRSAKDALLLWCQMKTAGYPQVNVTNFTSSWKDGLAFNALIHKHRPDLIDFDKLKDSNARHNL 234

  Fly   209 NTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPEPTRQYTY 273
            ..||||||:.|.|..:|||:|:. |..|||::|:|||..:||.|...:.:.              
  Rat   235 EHAFDVAERQLGIIPLLDPEDVF-TENPDEKSIITYVVAFYHYFSKMKVLA-------------- 284

  Fly   274 VPNNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLAGVQKKL 338
                    ....|:.||:....|.|:::|:|..||||||.||.:|:..||||:..|||:|||::|
  Rat   285 --------VEGKRVGKVIDHAIETEKMIEKYSGLASDLLTWIEQTISVLNSRKFANSLSGVQQQL 341

  Fly   339 EEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNSWKGLELAEKAF 403
            :.:.|||...|||:.::|..||....|:|:::|.:|:..|.|.:||.||||:.:|:.||.||...
  Rat   342 QAFSTYRTVEKPPKFQEKGNLEVLLFTIQSRMRANNQKVYTPHDGKLVSDINRAWESLEEAEYQR 406

  Fly   404 EEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELKALKKKHEAFESD 468
            |..|.:|.:|.|:||.||::|..||...|.|. .:.:.|.:||.....|..::|.||||||.|:|
  Rat   407 ELALRSELIRQEKLEQLARRFDRKAAMRETWL-NENQRLVTQDNFGYDLAAVEAAKKKHEAIETD 470

  Fly   469 LAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTALDEAERILEKI- 532
            .||:::||:.:..:||||....|||...::||...|...|..|..|.:.||..| ||...|:|: 
  Rat   471 TAAYEERVKALEDLAQELEKENYHDQKRISARKNNILRLWSYLQELLRSRRQRL-EATLALQKLF 534

  Fly   533 -DILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKATLG-EADKEFNLIVN 595
             |:||         ..:|:|..:..::.......:.|::.|:|.|...:|.:. :.||       
  Rat   535 QDMLH---------SIDWMDEIKAHILSAEFGKHLLEVEDLLQKHKLMEADIAIQGDK------- 583

  Fly   596 LVREVESIVKQHQIPGGLENPYTTLTANDMTRKWSDVRQLVPQRDQTLANELRKQQNNEMLRRQF 660
             |:.:.:...|.....|.: |.......|   :.|.:.|...:.....|....:.:.::.|.:.|
  Rat   584 -VKTITAATLQFTEGKGYQ-PCDPQVIQD---RVSHLEQCFSELSNMAAGRKAQLEQSKRLWKFF 643

  Fly   661 AEKANIVGPWIERQMDAVTAIGMG--------LQ---GSLEDQLHRLKEYEQAVYAYKPNIEELE 714
            .| .:....||:.:....:::..|        ||   .:.||:|..|..:             |:
  Rat   644 WE-MDEAESWIKEKEQIYSSLDYGKDLTSVLILQRKHKAFEDELRGLDAH-------------LK 694

  Fly   715 KIHQAVQESMIFENRYTNYTMET----LRVGWE---QLLTSINRNINEVEN-------------- 758
            :|.|.. |.|:.:.::.:..:||    :...|:   :|.....:::.:.||              
  Rat   695 QIFQEA-EDMVAQKQFGHPQIETRVKEVSAQWDHLKELAAFRKKDLQDAENFFQFQGDADDLKAW 758

  Fly   759 -----QILTRDSKGISQ--------------EQLNEFRSSFNHFDKNRTGRLSPEEFK 797
                 ::|:.:..|..:              |:|.|.|....|.:....|  .||||:
  Rat   759 LQDAHRLLSGEDVGQDEGATRALGKKHKEFLEELEESRGVMEHLENQAQG--FPEEFR 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 54/105 (51%)
CH_ACTN_rpt2 139..252 CDD:409065 68/118 (58%)
SPEC 302..525 CDD:238103 95/222 (43%)
SPEC 420..647 CDD:238103 64/229 (28%)
SPEC 538..760 CDD:238103 40/259 (15%)
EFh 775..842 CDD:238008 8/23 (35%)
EFhand_Ca_insen 847..913 CDD:400872
SptbXP_006240306.1 CH_SPTB-like_rpt1 40..156 CDD:409095 57/115 (50%)
CH_SPTB_rpt2 170..281 CDD:409168 64/111 (58%)
Spectrin 302..411 CDD:395348 49/108 (45%)
Spectrin 422..526 CDD:395348 40/105 (38%)
SPEC 530..742 CDD:238103 43/247 (17%)
SPEC 641..848 CDD:238103 34/191 (18%)
SPEC 745..954 CDD:238103 12/72 (17%)
SPEC 962..1168 CDD:238103
SPEC 1170..1379 CDD:238103
SPEC 1385..1475 CDD:197544
SPEC 1485..1690 CDD:238103
SPEC 1691..1901 CDD:238103
SPEC 1798..2005 CDD:238103
SPEC 2013..>2086 CDD:197544
PH_beta_spectrin 2182..2287 CDD:269975
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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