DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actn and Clmn

DIOPT Version :10

Sequence 1:NP_477485.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster
Sequence 2:XP_063117843.1 Gene:Clmn / 299285 RGDID:1306741 Length:1107 Species:Rattus norvegicus


Alignment Length:903 Identity:208/903 - (23%)
Similarity:328/903 - (36%) Gaps:243/903 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 EKQQKKTFTAWCNSHLRKAGTAID--NIEEDFRNGLKLMLLLEVISGETLPKPDRGKM-RFHKIA 94
            |..||:|||.|.|.||.|....::  ::..|.::|..||.||||:||..|....:... |..::.
  Rat    86 ENVQKRTFTRWINLHLEKCDPPLEVTDLFVDIQDGKILMALLEVLSGRNLLHEYKSSSHRIFRLN 150

  Fly    95 NVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDIS---------------- 143
            |:.|||.|:....|.||||.|.||.|||..:.||:||.|||.|.|::::                
  Rat   151 NIAKALKFLEDSNVKLVSIDAAEIADGNPSLVLGLIWNIILFFQIKELTGNLSRSSPSSSLSPGS 215

  Fly   144 -----------------------VEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCAL 185
                                   .::..|.:.||.|.||||..| .|.||:|..|::.||||.|:
  Rat   216 GGTDSDSSYPPTPTTERSVAVAVKDQRKAIKTLLSWVQRKTRKY-GVAVQDFAGSWRSGLAFLAV 279

  Fly   186 IHRHRPDLIDYAKLSKDNPLENLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYH 250
            |....|.|:|..:..:|:..|||..||.:|...|.|||:|:|:|:: ...|||::|:|||:.:..
  Rat   280 IKAIDPSLVDMKQALEDSTRENLEKAFRIAHDSLHIPRLLEPEDIM-VDMPDEQSIVTYVAQFLE 343

  Fly   251 AFQGAQQVGNVTHVPEPTRQYTYVPNNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWI 315
            .|........|....|...:.|:|...   |:.:.:..:||.::|..|:                
  Rat   344 RFPELDPEDFVNPDKEAPIESTFVRIK---ESPSEQESRVLLLSQNGEQ---------------- 389

  Fly   316 RRTMPWLNSRQADNSLAGVQKKLEEYRTYRRKHKPP-RVEQKAKLETNFNTLQTKLRLSNRPAY- 378
                |:..|.:.                   .|.|| :|....:||:     .|...|.:.|:: 
  Rat   390 ----PYTVSHET-------------------SHPPPDKVFVCDQLES-----PTGFSLGSAPSHK 426

  Fly   379 ---LPTE--------------GKTVSDISNSWKGLELAEKAFEEWLLAETMRLERLEHL-AQKFK 425
               .||:              |.|.|          ..|...|..:|:......|...| .:|..
  Rat   427 LPDSPTDFMHQIIDQVFQASMGNTES----------TTEPTPESSILSTRKDGRRSNSLPVKKSV 481

  Fly   426 H-KADAHEDWTRGKEEMLQSQDFR----------------QCKLNELKALKKKHEAFESDLAAHQ 473
            | :.|.|:|.:..|:. ..|.:||                ...|.|:...||..:.....|.|..
  Rat   482 HFETDLHKDASCSKDP-FYSSEFRFEGSPKATKELSKQDGHASLAEVSKEKKPEQEARLVLEAAS 545

  Fly   474 DRVEQIAAIAQELNTLEYHDCVSVNAR-------CQRICDQWDRLGAL-----TQRRRTALDEAE 526
            |:..:        :|:...|.:|.:|:       |....:....||..     :.|..|.|  |.
  Rat   546 DKAPE--------DTIVDTDAMSQDAQLPQDSSFCNGNVENPASLGEKGPSPPSPRDNTIL--AN 600

  Fly   527 RILEKIDILHLE----------FAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKA 581
            .:..|:.:|.:|          ...:|:.||       .||||.     ....|..::.....|.
  Rat   601 SVELKVPLLTVEPMDKDDYFECIPLKASKFN-------RDLVDF-----ASTSQAFVEDPSSHKK 653

  Fly   582 TLGEADKEFNLIVNLVR--------EVESIVKQHQIPGGLENPYTTLTANDMTRKWSDVRQLVPQ 638
            |.||.:...|......:        |.||...:.: |..||.|.......|..      ..|.|:
  Rat   654 TPGEEEGSENYTEKPGKRKSKSPHAETESTESRLE-PIKLETPPKDPEQEDQG------HTLPPE 711

  Fly   639 RDQTLANELRKQQNNEMLRRQFAEKANIVGPWIERQMDAVTAIGMGLQG---SLEDQLHRLKEYE 700
            .......|:.::...:..|....|:....|        .::|:|..:..   |....|..|:.:.
  Rat   712 TAADKKPEVYEKAKRKSTRHHSEEEGEAEG--------GLSAVGGEMPSNPPSTSVSLETLRSHS 768

  Fly   701 QAVYAYKPNIEELEKIHQAVQESMIFENRYTNY------TMETLRVGWEQLLTSINRNINEVENQ 759
            :....:||: ..|.|| ..:...:.:   |.:|      .:|....|.|. |.|.:.::...:..
  Rat   769 EEGLDFKPS-PPLSKI-SVIPHDLFY---YPHYEVPLAAVLEAYAEGGED-LKSEDADLEHPDGS 827

  Fly   760 IL--TRDSKGISQEQLNEFRSS--------------------FNHFDKNRTGRLSPEE 795
            .|  :|:.:....|:..|..||                    .:|.|.:..|..|..|
  Rat   828 YLQDSREEEEEEDEEEEEAHSSHSSCNFSLPVDNSYPRVNDHVSHVDGSSEGPTSASE 885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActnNP_477485.1 CH_ACTN_rpt1 31..135 CDD:409063 44/104 (42%)
CH_ACTN_rpt2 139..252 CDD:409065 45/151 (30%)
SPEC 302..525 CDD:238103 47/271 (17%)
SPEC 420..647 CDD:238103 54/274 (20%)
SPEC 538..760 CDD:238103 45/248 (18%)
EFh 775..842 CDD:238008 8/41 (20%)
EFhand_Ca_insen 847..913 CDD:430177
ClmnXP_063117843.1 None
Blue background indicates that the domain is not in the aligned region.

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