DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actn and clmn

DIOPT Version :9

Sequence 1:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster
Sequence 2:XP_002936114.3 Gene:clmn / 100488669 XenbaseID:XB-GENE-987920 Length:890 Species:Xenopus tropicalis


Alignment Length:807 Identity:188/807 - (23%)
Similarity:308/807 - (38%) Gaps:216/807 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EEEW-EREGL-----------LDPAWEKQQKKTFTAWCNSHLRKAGTAID--NIEEDFRNGLKLM 69
            |.:| :||.|           |....|..||:|||.|.|.||.|....|:  ::..|.::|..||
 Frog     5 EWDWFQREELIGQISDIRVQNLQVERENVQKRTFTRWINLHLEKRNPPIEVKDLFVDIQDGKILM 69

  Fly    70 LLLEVISGETL---PKPDRGKMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIW 131
            .||||::|::|   .||  ...|..::.|:.|||.|:....|.||||.|.||.|||..:.||:||
 Frog    70 SLLEVLTGQSLLQEYKP--SSHRIFRLNNIAKALKFLEDSNVKLVSIDAAEIADGNPSLVLGLIW 132

  Fly   132 TIILRFAIQDIS---------------------------------------VEEMTAKEGLLLWC 157
            .|||...|::::                                       .::..|.:.||.|.
 Frog   133 NIILFLQIKELTGNLNRMSSSSSLSSLPSGPDSDSSHSSTPSTEKSLSVSIKDQRKAIKALLNWV 197

  Fly   158 QRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSKDNPLENLNTAFDVAEKYLDIP 222
            |::|..| .|.||:|..|:|.||||.|||......|:|..:.......|||..||.:|::.|.:|
 Frog   198 QQRTRKY-GVAVQDFASSWKSGLAFLALIKAIDSRLVDIKQALVKTARENLEDAFRIAQEELSVP 261

  Fly   223 RMLDPDD-LINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPEPTRQYTYVPNNYNAETAANR 286
            |:|:|:| ::|:  |||::|||||:.:...|..........|:.....:.|:|   :..:..|..
 Frog   262 RLLEPEDVMVNS--PDEQSIMTYVTQFLEHFPELDAEDFSDHLDYLPLESTFV---HYKDGPAEE 321

  Fly   287 ICKVLKVNQE-------------------NERLMEEYERLASDLLEWIRRTMPWLNSRQADNSLA 332
            ..|::.:::|                   .|.|:.||  ..||....|.   .|..||...|...
 Frog   322 ESKIITLSKEPDVQGDIHSPATHPERYHYPEELIAEY--FHSDSHSKIN---DWSQSRSEHNQSP 381

  Fly   333 GVQKKLEEYRTYRRK-----HKPPRVEQKAKL-----ETN------------FNTLQTKLRLS-- 373
            ......|.|....::     |....:|..|:.     ||.            ||....|..:|  
 Frog   382 KGNSTKEIYSILGQEVIPSDHSDSSMESPAEEFGGIDETTEDRETLIQPSVVFNGSHAKNCISSD 446

  Fly   374 -NRPAYLPTEGKTVSDISNSWKGLELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRG 437
             |||                   :..::|.::....:...::..::..:....:.|       ..
 Frog   447 ENRP-------------------VSASDKLYKSTTHSNLKKINDIDPFSSIDVYTA-------TD 485

  Fly   438 KEEMLQSQDFRQCKLNELKALKKKHEAFESDL------AAHQDRVEQIAAI------------AQ 484
            ||....|::........:|:|:|......|.:      ..|.|.|:.....            |:
 Frog   486 KEPTSVSKESTNTYSETVKSLEKGPVEGTSFINGNGLSPGHNDNVDDACKYIPHHANATGSDHAK 550

  Fly   485 ELNTLEYHDCVSVNARCQRICDQWD-------RLGALTQRRRTALDEAER----ILEKI------ 532
            :|...:.:...:|..:|:.|.:...       .:..|..::..|:|..:.    ::..|      
 Frog   551 QLTVFQPYRASAVKEKCKSINEGHSVDSVSDTNVQILPPKKSDAIDTIDNADLPLISVIPHNLFY 615

  Fly   533 ---------DILHLEFAKRA--APFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQ-FKATLGE 585
                     |:|| .||:.:  ||.::          :|......|:...:|::::| ...|..:
 Frog   616 YPHYSVPIADVLH-AFAENSPGAPISS----------NMASSFPQEKDHDVIESYNQDCMQTYNK 669

  Fly   586 --ADKEFNLIVNLVREVESIVKQHQIPGGLENPYTTLTANDMTRK-WSDVRQLVPQ---RDQTLA 644
              ||||.|  ...|.|.:........|..|::| ...|||..|:. .|..:..|.:   .|.|..
 Frog   670 EMADKELN--TQFVDEAQDFSHSDNPPELLKSP-CLRTANGSTQNPASQTKDSVVEPTHSDNTQI 731

  Fly   645 NELRKQQ---------NNEMLRRQFAE 662
            :|:::.|         |::.|..|.||
 Frog   732 SEIQEGQRMAADKDFKNSKKLSFQKAE 758

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 46/108 (43%)
CH_ACTN_rpt2 139..252 CDD:409065 44/152 (29%)
SPEC 302..525 CDD:238103 43/272 (16%)
SPEC 420..647 CDD:238103 50/279 (18%)
SPEC 538..760 CDD:238103 34/143 (24%)
EFh 775..842 CDD:238008
EFhand_Ca_insen 847..913 CDD:400872
clmnXP_002936114.3 CH_CLMN_rpt1 29..142 CDD:409040 49/114 (43%)
CH_CLMN_rpt2 186..291 CDD:409094 43/107 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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