DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actn and sptbn4

DIOPT Version :9

Sequence 1:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster
Sequence 2:XP_002938861.2 Gene:sptbn4 / 100488521 XenbaseID:XB-GENE-1013360 Length:2545 Species:Xenopus tropicalis


Alignment Length:928 Identity:283/928 - (30%)
Similarity:453/928 - (48%) Gaps:140/928 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EQEEEWEREGLLDPAWE------------KQQKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLM 69
            ::|..|:........:|            ..||||||.|.||||.|....::::..|.|:|..:.
 Frog    25 QKEHPWDEPAATGKLFECSRIKALADERDAVQKKTFTKWINSHLSKVPLRVNDLYTDLRDGYIIT 89

  Fly    70 LLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTII 134
            .||||:|||.||||.||:||.|.:.||:|||.|:..:.|||.::|:.:|||||.::|||:|||||
 Frog    90 KLLEVLSGEQLPKPTRGRMRIHYLENVDKALQFLKEQRVHLENVGSHDIVDGNHRLTLGLIWTII 154

  Fly   135 LRFAIQDISV------EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDL 193
            |||.||.|.:      |..:||:.||||||.||:.|..||:|||..|::|||||.|||||||||:
 Frog   155 LRFQIQVIRIETEDSRETRSAKDALLLWCQMKTSGYPEVNIQNFTTSWRDGLAFSALIHRHRPDV 219

  Fly   194 IDYAKLSKDNPLENLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQV 258
            ||:.||:|.|...||..||:.||:.|.:.::|||:| :|...|||::|:|||..:||.|...:.:
 Frog   220 IDFNKLTKSNATYNLQHAFNTAEQQLGLTKLLDPED-VNMEHPDEKSIITYVVSFYHYFSKMKAL 283

  Fly   259 GNVTHVPEPTRQYTYVPNNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLN 323
            .                      ....||.|||....|.|:.:.:||.|||:|||||.||:..:.
 Frog   284 A----------------------VEGKRIGKVLDKAIETEKDIVKYEVLASELLEWIERTIAIIT 326

  Fly   324 SRQADNSLAGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSD 388
            :::..|||.|||::|:.:.||....||.:.::|..||....::|:|:|......|:|:|||.:||
 Frog   327 NQKFANSLLGVQQQLQVFTTYCTTEKPCKFQEKGNLEVLLFSIQSKMREEKCKLYVPSEGKNISD 391

  Fly   389 ISNSWKGLELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLN 453
            |:.:|..||.||...|..|..|.:|.|:||.|:|:|..||...|.|. .:.:.|.|||.....|.
 Frog   392 INKAWACLEKAEHEREVALRNELIRQEKLELLSQRFDQKAAMREAWL-SENQRLVSQDNFGYDLP 455

  Fly   454 ELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRR 518
            .::|..|||||.|:|::::::|::.:|.:||||....|:|...::|:...|..||:.|..:...|
 Frog   456 AVEAAMKKHEAIEADISSYEERIQVVADLAQELEAEGYYDICRISAQKDNILRQWNLLKDMLSSR 520

  Fly   519 RTALDEAERILEKI--DILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKA 581
            |..| |....|:||  :::::         .:|:|..:..|........:.|::.|:|.|     
 Frog   521 RARL-EQNLSLQKIFQEMVYM---------IDWMDEMQVPLSSKDFGKHLLEVEDLLQKH----- 570

  Fly   582 TLGEADKEFNLIVNLVREVESIVKQHQIPGGLENPYTTLTANDMTRKWSDVRQLVPQRDQTLANE 646
            .|.|||     |......|.|:                   |....|::.:....|...|.:.|.
 Frog   571 CLLEAD-----IAAQTERVNSL-------------------NQAALKFTQMTDYQPCDPQVICNR 611

  Fly   647 LRKQQNNEMLRRQFAEKANIVGPWIERQMDAVTAIGMGLQGSLEDQLHRLKEYEQAVYA------ 705
            :...::.....||.|||.       ..:::....:...|| .:|:....::|.||.:.|      
 Frog   612 VEHVRSCLEGLRQLAEKR-------RGELEESRRLWCFLQ-EVEEAEGWIREKEQILSAPQSYGK 668

  Fly   706 -----------YKPNIEELEKIHQAVQESM-----IFENRYTNYT-----METLRVGWEQLLTSI 749
                       :|..:.||...|..:|:::     :...|....:     ||.:|:.||.|..:.
 Frog   669 DLSSVLRLLSKHKILVGELRGRHAMLQQTLQKGEQVLAKRRKGMSGLRQRMEQVRLKWENLQKAC 733

  Fly   750 NRNINEVENQI----LTRDSKGISQEQLNEFR----SSFNHFD--------KNRTGRLSPEEFKS 798
            :.:..:::...    .:.|:..::....:.:|    ..|.|.:        |:|...:..|:.|.
 Frog   734 DNHQQKLQEASSFYQFSADTMELAGWLQDTYRLVSSDDFGHDEYSTQSLVKKHRAETVEIEKHKV 798

  Fly   799 CLVSLGY---SIGKDRQGDLDFQRILAVVDPNNTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRI 860
            .::.|..   .:|.:.:..:|.|..:..|:......|...|......:::.|.......::|..:
 Frog   799 AVLGLRQQLSELGAEYRDQVDVQITIVEVEQLYGEVVEVSALRSQWLQDALDVYKMFGEVNSCEV 863

  Fly   861 LAADKPYILPDELRRELP 878
            ...:|...|   ::.|:|
 Frog   864 WIDEKEQWL---MKMEIP 878

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 54/115 (47%)
CH_ACTN_rpt2 139..252 CDD:409065 62/118 (53%)
SPEC 302..525 CDD:238103 85/222 (38%)
SPEC 420..647 CDD:238103 59/228 (26%)
SPEC 538..760 CDD:238103 43/248 (17%)
EFh 775..842 CDD:238008 14/81 (17%)
EFhand_Ca_insen 847..913 CDD:400872 6/32 (19%)
sptbn4XP_002938861.2 SAC6 48..>454 CDD:227401 187/429 (44%)
SPEC 425..637 CDD:238103 63/258 (24%)
SPEC 642..849 CDD:238103 34/207 (16%)
SPEC 746..955 CDD:238103 21/136 (15%)
SPEC 956..1169 CDD:238103
SPEC 1171..1379 CDD:238103
SPEC 1276..1484 CDD:238103
SPEC 1488..1588 CDD:197544
SPEC 1592..1804 CDD:238103
SPEC 1804..1906 CDD:351773
SPEC 1915..>2079 CDD:238103
PTZ00121 <1985..2345 CDD:173412
PH_beta_spectrin 2401..2505 CDD:269975
DUF5069 <2473..2540 CDD:374811
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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