DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actn and sptbn2

DIOPT Version :9

Sequence 1:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster
Sequence 2:XP_012817859.1 Gene:sptbn2 / 100486199 XenbaseID:XB-GENE-1008690 Length:2437 Species:Xenopus tropicalis


Alignment Length:1000 Identity:312/1000 - (31%)
Similarity:472/1000 - (47%) Gaps:234/1000 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DGYMEQEEEWEREGLLDPAWEKQQKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLLEVISG 77
            :|..:|.:: |||.:        ||||||.|.||||.:....|.::..|.|:|..|:.||||:||
 Frog    81 EGRFKQLQD-EREAV--------QKKTFTKWVNSHLARVTCRISDLYNDLRDGRMLIRLLEVLSG 136

  Fly    78 ETLPKPDRGKMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI 142
            |.||||.:|:||.|.:.||:|||.|:..:.|||.::|:.:|||||.::|||:||||||||.||||
 Frog   137 EQLPKPTKGRMRIHCLENVDKALQFLKEQKVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDI 201

  Fly   143 SV------EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYAKLSK 201
            ||      |:.:||:.||||||.|||.|.||||.||..|::|||||.|::|:||||:||:..|.|
 Frog   202 SVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDIIDFDTLKK 266

  Fly   202 DNPLENLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVTHVPE 266
            .|...||..||:|||:.|.:.::|||:| :|..:|||::|:|||:.:||.|...:.:.       
 Frog   267 SNAHHNLQNAFNVAERELGLTKLLDPED-VNVDQPDEKSIITYVATFYHYFSKMKALA------- 323

  Fly   267 PTRQYTYVPNNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQADNSL 331
                           ....||.|||....|.::|:|.||.|||:||:||.:.:..||.|:..|||
 Frog   324 ---------------VEGKRIGKVLDQAIEADQLIENYEGLASELLQWIEQMIITLNDRKLANSL 373

  Fly   332 AGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDISNSWKGL 396
            :|||.:|:.:.|||...|||:..:|..||....|:|:|:|.:|:..|.|.|||.:|||:.:|:.|
 Frog   374 SGVQNQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYTPREGKLISDINKAWERL 438

  Fly   397 ELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLNELKALKKK 461
            |.||...|..|..|.:|.|:||.||.:|..||...|.|. .:.:.|.:||.....|..::|..:|
 Frog   439 EKAEHERELALRNELIRQEKLEQLAARFDRKAAMRETWL-SENQRLVAQDNFGVDLTAVEAALRK 502

  Fly   462 HEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTALD--- 523
            |||.|:|:.|:.:||:.:.|:|.||....|||...:.||...:....|.|..|...||..|.   
 Frog   503 HEAIETDILAYSERVQAVNAVADELEAENYHDVRRILARKCNVIRLSDYLRELVTARRQRLHMNL 567

  Fly   524 EAERILEKIDIL-----HLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKATL 583
            |.:|:.:.:..|     .::...::..:...|.|. |||:.   .||:.|....:|| ::.|:..
 Frog   568 ELQRMFQDLHYLMDWTEDMKGRLQSEDYGKHLHGV-EDLLQ---THTLVEADIAVQA-ERVKSVT 627

  Fly   584 GEADK-----------EFNLIVNLVREVE---------SIVKQHQIPGG---------------- 612
            ..|.|           :..|:.|.|..:|         |..::.::...                
 Frog   628 AVAQKFMTEDEGYKPCDPELVRNRVHLLEQRYAELCNLSAARRSKLEESRRLWKFFWDMGEEEAW 692

  Fly   613 --------LENPY-TTLTAN------------DMTRKWSDVRQLVPQRDQTL------ANELR-- 648
                    |.:.| ..||::            :|:.....::|.|.:.::.:      |.|:.  
 Frog   693 IREQSRLLLSDDYGKDLTSSLRLISKHNAFRGEMSGHRGPLQQTVAEGEELISKGHFGAGEIEER 757

  Fly   649 ----KQQNNEM----------LRR-----QFAEKANIVGPWIERQMDAVTAIGMGLQG----SLE 690
                |.|..||          ||.     ||...||....||   :|.:..:.....|    |.:
 Frog   758 IKEVKGQWTEMEALAEDRERRLREAYSYYQFQADANDAEAWI---LDTLRLVSTSEVGHDEYSTQ 819

  Fly   691 DQLHRLKEYEQAVYAYKPNIEELEK---------------------------------IH--QAV 720
            ..:.:.||.|:.:.:::|.|:.|.:                                 .|  ||:
 Frog   820 TLVKKHKEIEEEILSHRPAIDALHEQARGLPPAYSHSPEVDGRLPALEQRYEELVALAAHRKQAL 884

  Fly   721 QESMIF----------------ENRYTNYT--------METLRVGWEQLLTSINR------NINE 755
            |:|:..                :.::.|.|        :|.::..:|.|...:|.      ::||
 Frog   885 QDSLALHKMFSEADACLLWIDEKEQWLNVTEIPEKLEDLEVVQQRFETLEAEMNNLASRIASVNE 949

  Fly   756 VENQILTRDSKGIS-----QEQL----NEFRSSFN---------------HFDKNRTGRLSPEEF 796
            |..|:||.|.:..:     |:||    ||||...:               |.:.|.|.....|:.
 Frog   950 VAGQLLTTDQRNENSIRDMQDQLNSRWNEFRKLVDQKKGALDSALDIQNYHLECNETVCWMREKT 1014

  Fly   797 KSCLVSLGYSIGKDRQGDLDFQRIL 821
            |  ::....|:|.|..|....||.|
 Frog  1015 K--VIESTQSLGNDLAGVTALQRKL 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 53/103 (51%)
CH_ACTN_rpt2 139..252 CDD:409065 64/118 (54%)
SPEC 302..525 CDD:238103 90/225 (40%)
SPEC 420..647 CDD:238103 65/297 (22%)
SPEC 538..760 CDD:238103 62/374 (17%)
EFh 775..842 CDD:238008 14/61 (23%)
EFhand_Ca_insen 847..913 CDD:400872
sptbn2XP_012817859.1 CH 94..197 CDD:237981 56/110 (51%)
CH 213..316 CDD:237981 57/103 (55%)
Spectrin 341..451 CDD:278843 50/109 (46%)
SPEC 465..563 CDD:197544 33/98 (34%)
SPEC 568..783 CDD:238103 36/219 (16%)
SPEC 681..888 CDD:238103 34/209 (16%)
SPEC 785..994 CDD:238103 40/211 (19%)
SPEC 997..1206 CDD:238103 11/42 (26%)
SPEC 1210..1419 CDD:238103
SPEC 1420..1630 CDD:238103
SPEC 1527..1734 CDD:238103
SPEC 1632..1843 CDD:238103
SPEC 1844..2051 CDD:238103
SPEC 2060..>2117 CDD:197544
PH 2272..2378 CDD:278594
PH_beta_spectrin 2272..2377 CDD:269975
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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