DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment usp and nr2c2

DIOPT Version :9

Sequence 1:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001116766.1 Gene:nr2c2 / 569321 ZFINID:ZDB-GENE-080403-8 Length:623 Species:Danio rerio


Alignment Length:624 Identity:159/624 - (25%)
Similarity:248/624 - (39%) Gaps:183/624 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 PDISQLNDSNNSSFSPKAESPVPFMQAMSMVHVLPGSNS---------ASSNNNSAGDAQMAQAP 76
            |...|:..:..|..||:....|...|....:.::...:|         ||.:.:.||...:| :|
Zfish    35 PQRIQIISTEPSVTSPQRIQIVTEQQTGQKIQIVTALDSSVPKQQFLLASPDGSPAGKVLLA-SP 98

  Fly    77 NSAGG-------------------SAAAAVQQQYPPNHPLSGSKHL--CSICGDRASGKHYGVYS 120
            .|:..                   :.|.:|::.......||..:.:  |.:|||:|||:|||..|
Zfish    99 ESSSAKQLIFATADSLVPGRIQFVTDAVSVERLLGKGTDLSRVQPIEYCVVCGDKASGRHYGAVS 163

  Fly   121 CEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEE-------R 178
            ||||||||||:|||.|||:||.|::|:|:|..|||||:||.:|||..|||.|:||.|       |
Zfish   164 CEGCKGFFKRSVRKSLTYSCRSNQDCVINKHHRNRCQFCRLRKCLEMGMKMESVQSERKPIDLPR 228

  Fly   179 QRGARNAAGR--------------------------------------------------LSASG 193
            ::.|..||..                                                  |.|:.
Zfish   229 EKPANCAASTEKIYIRKDLRSPLIATPTFISEKDSSRSKLLDSGMLVNIQQPLIQADGTLLLATD 293

  Fly   194 GGSSGPGSVG-------------GSSSQGGGGGGGV-------------------------SGGM 220
            ...||.|.:|             .|.|.|....|.:                         |..:
Zfish   294 KTESGQGDLGTLANVVTSLANLNDSLSNGEATDGQLEESPSEITRAFDTLAKALNPGELTESQSL 358

  Fly   221 GSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVV 285
            ...:|........:||| .|..:||.|....|   |..::|....|  :..|:|.. |..:|:..
Zfish   359 SEVDGVGGATIQVISRD-QISPLIEVEGPLLT---DTHVSFKLTMP--SPMPEYLN-VHYICESA 416

  Fly   286 NKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS-IVSLDDGGAGGGGGGLGHD 349
            ::.||..:.:||.:|.|..:..:....|::|.|.||.|..:|.|: |:||..             
Zfish   417 SRLLFLSMHWARSIPAFLALGQECNTALVRACWNELFILGLAQCAQIMSLST------------- 468

  Fly   350 GSFERRSPGLQPQQLFLNQSFSYHRNSAIK-------AGVSAIFDRI--LSELSVKMKRLNLDRR 405
                            :..:...|..|:|:       ..:..:.:.|  |.|....|.:|..|..
Zfish   469 ----------------ILTAIVNHLQSSIQDVDKLSSERIKLVMEHIWKLQEFCNSMAKLQTDAY 517

  Fly   406 ELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISL 470
            |.:.||||:|::||..|:.|.::||..:||....|.::.:..:|.:..|.|::||||||||.:|.
Zfish   518 EYAYLKAIVLFSPDHPGLSSCSQIEKFQEKAQMELQDYVQKTYPDETYRLARILLRLPALRLMSS 582

  Fly   471 KCQDHLFLFRITSDRPLEEL-----------FLEQLEAP 498
            ...:.||...:..:.|::.:           :..|:.||
Zfish   583 SITEELFFTGLIGNVPIDSIIPYILKMETADYNSQITAP 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 50/84 (60%)
NR_LBD_RXR_like 237..480 CDD:132741 68/252 (27%)
nr2c2NP_001116766.1 NR_DBD_TR2_like 142..228 CDD:143525 50/85 (59%)
NR_LBD_TR2_like 387..609 CDD:132750 64/256 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577467
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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