DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and hnf4g

DIOPT Version :9

Sequence 1:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:XP_021325864.1 Gene:hnf4g / 557104 ZFINID:ZDB-GENE-060929-100 Length:459 Species:Danio rerio


Alignment Length:480 Identity:136/480 - (28%)
Similarity:215/480 - (44%) Gaps:110/480 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 FSPKAESPVP-FMQAMSMVHVLPGSNSASSN---NNS----AGDAQMAQAPNSAGGSAAAAVQQQ 90
            |||   :|:| .:..|.:.:...|.:...|.   .|:    .|: .|...||.:.|.        
Zfish     3 FSP---TPLPKSLLDMDVANYCEGLDPTYSTLGFENAEVLYCGE-NMPTEPNISQGE-------- 55

  Fly    91 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNR 155
                   :|....|:||||:|:|||||..||:||||||:|::||...|:||.||.|::||.:||:
Zfish    56 -------NGVSSNCAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFNRQCVVDKDKRNQ 113

  Fly   156 CQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGM 220
            |::||..||...|||:||||.||.|                                       :
Zfish   114 CRFCRLHKCFRAGMKKEAVQNERDR---------------------------------------I 139

  Fly   221 GSGNGSDDFMTNSVSRDF-SIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQV 284
            .|.....|      |.|. .|..:..||..::.|....:    .:|| :.|.......:|.:|:.
Zfish   140 SSRRNIQD------SHDLPPITALAHAEALSQQQITAAS----PMGP-ADVSEKKSATISDVCES 193

  Fly   285 VNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHD 349
            :.:||..:||:|:.:|.|.::||||||.||:|...|.|:..||                      
Zfish   194 MKQQLLVLVEWAKYIPAFGELPLDDQVSLLRAHAGEHLLLGVA---------------------- 236

  Fly   350 GSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAII 414
                :||...: ..|.|......|||.. :..:..:.:|:|.||.:..:.:.:|..|.:.||||:
Zfish   237 ----KRSMSYK-DLLLLGNGCVIHRNCP-EPEIGRVSNRVLDELVLPFQDIQIDDNEYAALKAIV 295

  Fly   415 LYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLF 479
            .::||.:.::..::|:..|.:|...|:::.........|||.:|||.||.|:||:.:..:.|...
Zfish   296 FFDPDAKSLRDPSKIKAMRYQVQMSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQLQFI 360

  Fly   480 RITS----DRPLEELFLEQLEAPPP 500
            ::..    |..|:|:.|..|....|
Zfish   361 KLFGLAKIDNLLQEMLLGGLTTEQP 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 44/75 (59%)
NR_LBD_RXR_like 237..480 CDD:132741 65/243 (27%)
hnf4gXP_021325864.1 NR_DBD_HNF4A 62..137 CDD:143518 45/74 (61%)
NR_LBD_HNF4_like 154..375 CDD:132729 66/253 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577463
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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