Protein Alignment usp and nr2c1

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_001018458.1
• Gene: nr2c1 / 553649
• ZFINID: ZDB-GENE-041210-198
• Length: 600
• Species: Danio rerio
• Alignment Length: 573
• Identity: 147/573 - (25%)
• Similarity: 240/573 - (41%)
• Gaps: 180/573 - (31%)

  Fly    55 PGSNSASSNNNSAGDAQMAQAPNSAG--------GSAAAAVQQQYPPNHPLSGSKHLCSICGDRA 111
            |.....:|::.||.:..:..:|..:|        ||...:::   ||       ...|.:|||:|
Zfish    66 PAKVILTSSDGSAVNQLLFASPELSGQQIQFVTDGSDQGSMK---PP-------VEYCVVCGDKA 120

  Fly   112 SGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQE 176
            ||:|||..|||||||||||::||:|.|.||.:..|:|:|..||||||||.|:|:..|||:::||.
Zfish   121 SGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGECVINKHHRNRCQYCRLQRCMALGMKQDSVQC 185

  Fly   177 E-------RQRGA------------RNAAGRLSA-----SGGGSSGPGSVGGS------------ 205
            |       |::.|            :|....|:|     |...|:.|.|:..|
Zfish   186 ERKPVEVSREKPANCAPSIEKIYIRKNLCSPLAAMPTFVSQKESTRPTSLLDSNMLLNIQQSISK 250

  Fly   206 ---------------SSQGG-GGGGGVSGGMGSGNGSDDFMTNS--------VSRDFSIERIIEA 246
                           ||||. |....|...:|..|.|.:.|.:|        :|.|.|:...|:.
Zfish   251 LDNTILIPSSPDQNDSSQGDLGTLANVVTSLGRLNKSREMMDSSTDLSGIDTMSNDDSVMTDIQR 315

  Fly   247 EQ---------------RAETQCGDRA-----------------------LTFLRVGPYSTV--- 270
            |:               :||..||:..                       |:.:.| |:..:
Zfish   316 EESNDVTRAFDTLTKVLKAEESCGEEVADGAVAVRDDEQTSALLELEGPLLSDMHV-PFKLMMPL 379

  Fly   271 -QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIV-- 332
             .||:.. ::.:|:..::.||..:.:||.:|.|..:..::.:.|:||.|.||....:|.||.:
Zfish   380 PMPDFLN-LNYICESASRLLFLSMHWARSIPAFQALGSENGITLMKACWNELFALGLAQCSHIMN 443

  Fly   333 --------------SLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVS 383
                          |||:                |:.||                      ..|.
Zfish   444 VETILTAIINHLQTSLDE----------------EKLSP----------------------ERVK 470

  Fly   384 AIFDRI--LSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRL 446
            .:.:.|  :.|....|.|::.|..|.:.|||::|::||...:....:||..:||.|..|.::...
Zfish   471 QVMEHIWRMQEFCNSMSRMSPDAYEYAYLKAVVLFSPDHSAVDGTLQIERFQEKAYMELQDYVSK 535

  Fly   447 EHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEEL--FLEQLEA 497
            .:|.|..|.::||:||||||.:|....:.||...:..:..::.:  ::.::|:
Zfish   536 VYPEDTYRLSKLLVRLPALRLMSAAVTEELFFAGLIGNVQIDSIIPYILKMES 588

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	46/82 (56%)
		NR_LBD_RXR_like	237..480	CDD:132741	68/302 (23%)
nr2c1	NP_001018458.1	NR_DBD_TR2_like	108..194	CDD:143525	48/92 (52%)
		NR_LBD_TR2_like	365..586	CDD:132750	60/260 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170577461
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.840