Protein Alignment usp and rxrb

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: XP_012823803.1
• Gene: rxrb / 548691
• XenbaseID: XB-GENE-480167
• Length: 456
• Species: Xenopus tropicalis
• Alignment Length: 527
• Identity: 214/527 - (40%)
• Similarity: 287/527 - (54%)
• Gaps: 133/527 - (25%)

  Fly    21 PDISQLNDSNNSSFSPKAESPVPFMQAM--SMVHVLPGSNSASSNNNSAG--------------- 68
            ||.|.|:.....|:|   ::|.|....:  |||    ||...||.|:..|
 Frog    10 PDTSSLSPPLGRSYS---DTPPPPSAPLHPSMV----GSAMTSSVNSPLGSIGSPFQVINCSVGS 67

  Fly    69 ---------------DAQMAQAPNSAGGSAAAAVQQQYPP-------NHPLSGS---KHLCSICG 108
                           ..|:....|.:|....::.:...||       :||..|:   |.||:|||
 Frog    68 PGIPGTPSIGYGPVSSPQINSTVNLSGLHPVSSSEDVKPPLGMRSMSSHPNGGAVSGKRLCAICG 132

  Fly   109 DRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKRE- 172
            ||:||||||||||||||||||||:||||||.||:|::||:|||||||||||||||||..|||||
 Frog   133 DRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNRCQYCRYQKCLATGMKREV 197

  Fly   173 ------AVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMT 231
                  |||||||||...                                       :|..:| :
 Frog   198 ISKYSPAVQEERQRGKER---------------------------------------DGEAEF-S 222

  Fly   232 NSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYA 296
            .:::.:..:|:|:|||...| |..|::|.    |..|...|     |:.:||..:||||.:||:|
 Frog   223 GAINEEMPVEKILEAELAVE-QKSDQSLE----GGGSPSDP-----VTNICQAADKQLFTLVEWA 277

  Fly   297 RMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQP 361
            :.:|||:::|||||||||:|.|.|||||:.:..|| |:.||
 Frog   278 KRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI-SVKDG------------------------ 317

  Fly   362 QQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSR 426
              :.|......|||||..|||.|||||:|:||..||:.:.:|:.||.||:||||:|||.:|:.:.
 Frog   318 --ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNP 380

  Fly   427 AEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELF 491
            .::|:.||||||.|:.:|:.::|...||||:|||||||||||.|||.:|||.|::..|.|::...
 Frog   381 GDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL 445

  Fly   492 LEQLEAP 498
            :|.||||
 Frog   446 MEMLEAP 452

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	64/82 (78%)
		NR_LBD_RXR_like	237..480	CDD:132741	109/242 (45%)
rxrb	XP_012823803.1	Nuc_recep-AF1	13..120	CDD:288658	22/113 (19%)
		NR_DBD_RXR	127..209	CDD:143514	64/81 (79%)
		NR_LBD_RXR_like	228..434	CDD:132741	109/242 (45%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	188	1.000	Domainoid score	I3247
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	349	1.000	Inparanoid score	I2229
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D389616at33208
OrthoFinder	1	1.000	-	-		FOG0001500
OrthoInspector	1	1.000	-	-		otm49544
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4818
SonicParanoid	1	1.000	-	-		X118
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	7	7.090