Protein Alignment usp and nr2f6

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_001004841.1
• Gene: nr2f6 / 448119
• XenbaseID: XB-GENE-480818
• Length: 389
• Species: Xenopus tropicalis
• Alignment Length: 454
• Identity: 135/454 - (29%)
• Similarity: 207/454 - (45%)
• Gaps: 87/454 - (19%)

  Fly    50 MVHVLPGSNSASSNNNSAG-----DAQMAQAPNSAGGSAAAAVQQQYPPNHPLSGSKHLCSICGD 109
            |..|..|....:.:.|..|     :::..:|....|.|......::.|      |.:..|.:|||
 Frog     1 MAMVSGGWGDPNGDTNGVGKGYPRNSEEEEASPQGGMSDPEQGDEERP------GIQVDCVVCGD 59

  Fly   110 RASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAV 174
            ::|||||||::|||||.||||:||::|:|.||.||:|.||:..||:|||||.:||...||::|||
 Frog    60 KSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAV 124

  Fly   175 QEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFS 239
            |..|...|.::|...||.|.|                               :.|....||.  .
 Frog   125 QRGRIPPAHSSASPTSAPGAG-------------------------------EYFNGQPVSE--L 156

  Fly   240 IERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQ 304
            |.:::.||....:          |.|.....|....| :..:|::..:.||..||::|.:|:|.:
 Frog   157 ISQLLRAEPYPAS----------RYGSQYAQQGSVMG-IDNICELAARLLFSTVEWSRNIPYFPE 210

  Fly   305 VPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLF-LNQ 368
            :.:.|||.||:.:|.||.:.:.|..::                             |..:. |..
 Frog   211 LAMADQVSLLRLSWSELFVLSAAQSAL-----------------------------PLHMAPLLA 246

  Fly   369 SFSYHRNSAIKAGVSAIFD--RILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEM 431
            :..:|.:......|.:..|  |:..:...|:.||.:|..|.:|||||.|:..|..|:...|.:|.
 Frog   247 AAGFHASPMSADRVVSFMDQIRLFQDQVEKLNRLQVDSAEYACLKAIALFTSDACGLTDPAHVES 311

  Fly   432 CREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQL 495
            .:||....|.|:.|.::|....||.:|||||||||::.......||..|:....|:|.|..:.|
 Frog   312 LQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDML 375

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	46/75 (61%)
		NR_LBD_RXR_like	237..480	CDD:132741	64/245 (26%)
nr2f6	NP_001004841.1	NR_DBD_COUP_TF	54..126	CDD:143516	45/71 (63%)
		NR_LBD_COUP-TF	152..388	CDD:132746	71/266 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X118
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.000