Protein Alignment usp and Hr83

DIOPT Version :10

• Sequence 1: NP_476781.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_649647.1
• Gene: Hr83 / 40783
• FlyBaseID: FBgn0037436
• Length: 278
• Species: Drosophila melanogaster
• Alignment Length: 380
• Identity: 94/380 - (24%)
• Similarity: 136/380 - (35%)
• Gaps: 141/380 - (37%)

  Fly   104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC-RENRNCIIDKRQRNRCQYCRYQKCLTC 167
            |::|||::|||||||..|:||..||||:||:..:||| ....||::||.:||.|..||:|:||..
  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71

  Fly   168 GMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTN 232
            ||...|||||  ||.||....|..:|...:.|.....|.:.
  Fly    72 GMNAAAVQEE--RGPRNQQVALYRTGRRQAPPSQAAPSPTP------------------------ 110

  Fly   233 SVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYAR 297
                                  ..:||.|                     |::.:.|...:..|:
  Fly   111 ----------------------HSQALHF---------------------QILAQILVTCLRQAK 132

  Fly   298 MMPHFAQVPLDDQVILLKAAWIELLIANVA-WCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQP 361
            ....||.:....|..:.:..|.|:.:...: |    |||
  Fly   133 ANEQFALLDRCQQDAIFQVVWSEIFVLRASHW----SLD-------------------------- 167

  Fly   362 QQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPD------- 419
                            |.|.:....|..|..|..:..:|..|..||:.::::||...:
  Fly   168 ----------------ISAMIDGCGDEQLKRLICEAHQLRADVLELNFMESLILCRKELAINAEY 216

  Fly   420 --IRGIKSRAE-IEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLK 471
              |.|..|:|. |.:.|   |. |.:...|       ||.||||   .||.:.|:
  Fly   217 AVILGSHSKAALISLAR---YT-LQQSNYL-------RFGQLLL---GLRQLCLR 257

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_476781.1	NR_DBD_RXR	102..178	CDD:143514	41/74 (55%)
		NR_LBD_RXR_like	237..480	CDD:132741	44/246 (18%)
Hr83	NP_649647.1	NR_DBD_PNR_like_2	7..88	CDD:143515	46/82 (56%)