DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nr2f1b

DIOPT Version :9

Sequence 1:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_956886.1 Gene:nr2f1b / 393564 ZFINID:ZDB-GENE-040426-1438 Length:389 Species:Danio rerio


Alignment Length:448 Identity:138/448 - (30%)
Similarity:203/448 - (45%) Gaps:90/448 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 PGSNSASSNNNSAGDAQMAQ---APNSAGGSAAAAVQQQYPPNHPLSGSKHL-CSICGDRASGKH 115
            |....|:.::.||...:..|   :|.||...|..|.|.|          :|: |.:|||::||||
Zfish    11 PQEELAAVDDQSAAGREHLQHRHSPKSAEEKAQIAAQNQ----------QHVECVVCGDKSSGKH 65

  Fly   116 YGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQR 180
            ||.::|||||.||||:||::|:|.||.||||.:|:..||:|||||.:|||..||:|||||.    
Zfish    66 YGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPVDQHHRNQCQYCRLKKCLKVGMRREAVQR---- 126

  Fly   181 GARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIE 245
                  ||:..:....|......|....|                 ..:::..:|      .::.
Zfish   127 ------GRMPPNQPNPSHYALTNGDHLNG-----------------QCYLSGYIS------LLLR 162

  Fly   246 AEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQ 310
            ||....::.|::.:           |......:..:|::..:.||..||:||.:|.|..:.:.||
Zfish   163 AEPYPASRYGNQCM-----------QSGNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQ 216

  Fly   311 VILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLF-LNQSFSYHR 374
            |.||:..|.||.:.|.|..|:                             |..:. |..:...|.
Zfish   217 VSLLRLTWSELFVLNAAQSSM-----------------------------PLHVAPLLAAAGLHA 252

  Fly   375 NSAIKAGVSAIFD--RILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVY 437
            :......|.|..|  |...|...|:|.|.:|..|.||.|||:|:..|..|:.....||..:||..
Zfish   253 SPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTSDACGLSDIPHIEGLQEKSQ 317

  Fly   438 ACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQL 495
            ..|:|:.|.::|....||.:|||||||||.:|....:.||..|:....|:|.|..:.|
Zfish   318 CALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVGKTPIETLIRDML 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 48/76 (63%)
NR_LBD_RXR_like 237..480 CDD:132741 67/245 (27%)
nr2f1bNP_956886.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..39 5/19 (26%)
NR_DBD_COUP_TF 54..126 CDD:143516 46/71 (65%)
NR_LBD_COUP-TF 152..387 CDD:132746 73/270 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X118
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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