DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and Rxrb

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:XP_006256022.2 Gene:Rxrb / 361801 RGDID:3611 Length:625 Species:Rattus norvegicus


Alignment Length:531 Identity:214/531 - (40%)
Similarity:273/531 - (51%) Gaps:138/531 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LNDSNNSSFSPKAESPVPFMQAMSMVHVLPGSNSASSNNNSAGDAQMAQAP-------------- 76
            :.||...|.||.:.||.|..|.     :.|.|.....:..||....|...|              
  Rat   171 MGDSGRDSRSPDSSSPNPLSQG-----IPPSSPPGPPHTPSAPPPPMPPPPLGSPFPVISSSMGS 230

  Fly    77 --------------------NS-----AGGS-----------AAAAVQQQYPPNHPLSGSKHLCS 105
                                ||     .|||           ....:....||..|.:| |.||:
  Rat   231 PGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAG-KRLCA 294

  Fly   106 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMK 170
            |||||:||||||||||||||||||||:||||||:||:|::|.:|||||||||||||||||..|||
  Rat   295 ICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMK 359

  Fly   171 REAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVS 235
            ||||||||||                       |....|.|.|.|                 ...
  Rat   360 REAVQEERQR-----------------------GKDKDGDGDGAG-----------------GAP 384

  Fly   236 RDFSIERIIEAEQRAETQCGDRALTFLRVGPYST----VQPDYKGAVSALCQVVNKQLFQMVEYA 296
            .:..::||:|||...| |..|:.:.    ||..|    ..|:  ..|:.:||..:||||.:||:|
  Rat   385 EEMPVDRILEAELAVE-QKSDQGVE----GPGGTGGSGSSPN--DPVTNICQAADKQLFTLVEWA 442

  Fly   297 RMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQP 361
            :.:|||:.:|||||||||:|.|.|||||                          ||..||..:: 
  Rat   443 KRIPHFSSLPLDDQVILLRAGWNELLIA--------------------------SFSHRSIDVR- 480

  Fly   362 QQLFLNQSFSYHRNSAIKAGVSAIFD----RILSELSVKMKRLNLDRRELSCLKAIILYNPDIRG 422
            ..:.|......|||||..|||.||||    |:|:||..||:.:.:|:.||.||:||||:|||.:|
  Rat   481 DGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKG 545

  Fly   423 IKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPL 487
            :.:..|:|:.||||||.|:.:|:.::|...||||:|||||||||||.|||.:|||.|::..|.|:
  Rat   546 LSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 610

  Fly   488 EELFLEQLEAP 498
            :...:|.||||
  Rat   611 DTFLMEMLEAP 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 63/75 (84%)
NR_LBD_RXR_like 237..480 CDD:132741 109/250 (44%)
RxrbXP_006256022.2 None

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