Protein Alignment usp and dsf

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_001260109.1
• Gene: dsf / 33823
• FlyBaseID: FBgn0015381
• Length: 691
• Species: Drosophila melanogaster
• Alignment Length: 704
• Identity: 124/704 - (17%)
• Similarity: 196/704 - (27%)
• Gaps: 338/704 - (48%)

  Fly   104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRN----CIIDKRQRNRCQYCRYQKC 164
            |.:||||:||||||:|||:||.|||||::.::..|.|:...:    |.:||..||:|:.||..||
  Fly    13 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKC 77

  Fly   165 LTCGMKREAVQEER--------------------------------------------------- 178
            ....|.::|||.||
  Fly    78 FQSAMNKDAVQHERGPRKPKLHPQLHHHHHHAAAAAAAAHHAAAAHHHHHHHHHAHAAAAHHAAV 142

  Fly   179 ------------------------------------------------------QRGARNAAGRL 189
                                                                  |:|....||.|
  Fly   143 AAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPPAPAAPPSGFHLTASGAQQGPAPPAGHL 207

  Fly   190 SASGGG-----------------------------------SSGPG------------------- 200
            ...|.|                                   .||||
  Fly   208 HHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSSAISGSGPGSTLPFPSHLLHHNLIAEAA 272

  Fly   201 ------------------------------------------------SVGGSSSQGGGGGGGVS 217
                                                            |:....|:.|||..|:|
  Fly   273 SKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNYSSPSPSNSIQSISSIGSRSGGGEEGLS 337

  Fly   218 GG----------------------MGSGNGSDDFMTNSVS---RDFSIERIIEA----------- 246
            .|                      .||.:.:....|:|.|   |..|...:.||
  Fly   338 LGSESPRVNVETETPSPSNSPPLSAGSISPAPTLTTSSGSPQHRQMSRHSLSEATTPPSHASLMI 402

  Fly   247 -------EQRAETQCGDRALTFLRVG---PYSTVQPDYKGAVSALCQVVN--------------- 286
                   ........|:...:....|   |.:...|..:..|.:.|...:
  Fly   403 CASNNNNNNNNNNNNGEHKQSSYTSGSPTPTTPTPPPPRSGVGSTCNTASSSSGFLELLLSPDKC 467

  Fly   287 -----------------------------------KQLFQMVEYARMMPHFAQVPLDDQVILLKA 316
                                               :.||..|.:.:.:..|..:..:||.:||:.
  Fly   468 QELIQYQVQHNTLLFPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQE 532

  Fly   317 AWIELLIANVA-WCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKA 380
            :|.||.:.|:| |  .:.||                   .:|.|:...:         |...::.
  Fly   533 SWKELFLLNLAQW--TIPLD-------------------LTPILESPLI---------RERVLQD 567

  Fly   381 GVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCR 445
            ..:....:.:.|:..:.:::..|..|:.|:|||.|:.|:..|:.....:||.:::....|.:|.|
  Fly   568 EATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVR 632

  Fly   446 LEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPP 499
            |.:|....||.:|||.||:||:|.....:.||......:.|:..|..:.....|
  Fly   633 LRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIARLLRDMYTMEP 686

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	37/77 (48%)
		NR_LBD_RXR_like	237..480	CDD:132741	57/314 (18%)
dsf	NP_001260109.1	NR_DBD_TLX	5..98	CDD:143537	39/84 (46%)
		NR_LBD_Tlx_PNR_like	467..671	CDD:132748	48/233 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24083
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.010