DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment usp and hnf4a

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:XP_021325423.2 Gene:hnf4a / 322358 ZFINID:ZDB-GENE-030131-1077 Length:468 Species:Danio rerio


Alignment Length:464 Identity:137/464 - (29%)
Similarity:208/464 - (44%) Gaps:117/464 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 MQAMSMVHVLPGSNSASSNNNSAGDAQMAQAPNSAGGSAAAAVQQQYPPNHPLSGSKHLCSICGD 109
            ||.::|  ....|...|:|.|:|                          ||  .|:..||:||||
Zfish    31 MQVLAM--STDSSPQESANMNAA--------------------------NH--LGAGTLCAICGD 65

  Fly   110 RASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAV 174
            ||:|||||..||:||||||:|:|||:..|:||.||.||:||.:||:|:|||.:||...|||:|.:
Zfish    66 RATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEVI 130

  Fly   175 QEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFS 239
            .....:..|:......:|...||.|                                       |
Zfish   131 SSSAVQNERDRISTRRSSYEDSSLP---------------------------------------S 156

  Fly   240 IERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYK----GAVSALCQVVNKQLFQMVEYARMMP 300
            |..:|:|:          .|:.....|...:..|.:    .|:..:|:.:.:||..:||:|:.:|
Zfish   157 INALIQAD----------VLSRQISSPGPILNGDIRTKKVAAIMDVCESMKQQLLVLVEWAKYIP 211

  Fly   301 HFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLF 365
            .|..:||||||.||:|...|.|:...|..|::..|.       ..||:|....|..|.|:     
Zfish   212 AFCDLPLDDQVALLRAHAGEHLLLGAAKRSMMYKDI-------LLLGNDHIIPRNCPELE----- 264

  Fly   366 LNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIE 430
                            ||.:..|||.||.:..:.|.:|..|.:|||||:.::||.:|:...::|:
Zfish   265 ----------------VSRVAVRILDELVLPFQDLQIDDNEYACLKAIVFFDPDAKGLSDPSKIK 313

  Fly   431 MCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQL 495
            ..|.:|...|:::.........|||.:|||.||.|:||:.:..:.:...::.....::.|..|.|
Zfish   314 RMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEML 378

  Fly   496 ------EAP 498
                  |||
Zfish   379 LGGSANEAP 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 46/75 (61%)
NR_LBD_RXR_like 237..480 CDD:132741 69/246 (28%)
hnf4aXP_021325423.2 None

Return to query results.
Submit another query.