DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment usp and hnf4a

DIOPT Version :9

Sequence 1:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:XP_021325423.1 Gene:hnf4a / 322358 ZFINID:ZDB-GENE-030131-1077 Length:470 Species:Danio rerio


Alignment Length:464 Identity:137/464 - (29%)
Similarity:208/464 - (44%) Gaps:117/464 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 MQAMSMVHVLPGSNSASSNNNSAGDAQMAQAPNSAGGSAAAAVQQQYPPNHPLSGSKHLCSICGD 109
            ||.::|  ....|...|:|.|:|                          ||  .|:..||:||||
Zfish    33 MQVLAM--STDSSPQESANMNAA--------------------------NH--LGAGTLCAICGD 67

  Fly   110 RASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAV 174
            ||:|||||..||:||||||:|:|||:..|:||.||.||:||.:||:|:|||.:||...|||:|.:
Zfish    68 RATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEVI 132

  Fly   175 QEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFS 239
            .....:..|:......:|...||.|                                       |
Zfish   133 SSSAVQNERDRISTRRSSYEDSSLP---------------------------------------S 158

  Fly   240 IERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYK----GAVSALCQVVNKQLFQMVEYARMMP 300
            |..:|:|:          .|:.....|...:..|.:    .|:..:|:.:.:||..:||:|:.:|
Zfish   159 INALIQAD----------VLSRQISSPGPILNGDIRTKKVAAIMDVCESMKQQLLVLVEWAKYIP 213

  Fly   301 HFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLF 365
            .|..:||||||.||:|...|.|:...|..|::..|.       ..||:|....|..|.|:     
Zfish   214 AFCDLPLDDQVALLRAHAGEHLLLGAAKRSMMYKDI-------LLLGNDHIIPRNCPELE----- 266

  Fly   366 LNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIE 430
                            ||.:..|||.||.:..:.|.:|..|.:|||||:.::||.:|:...::|:
Zfish   267 ----------------VSRVAVRILDELVLPFQDLQIDDNEYACLKAIVFFDPDAKGLSDPSKIK 315

  Fly   431 MCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQL 495
            ..|.:|...|:::.........|||.:|||.||.|:||:.:..:.:...::.....::.|..|.|
Zfish   316 RMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMAKIDNLLQEML 380

  Fly   496 ------EAP 498
                  |||
Zfish   381 LGGSANEAP 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 46/75 (61%)
NR_LBD_RXR_like 237..480 CDD:132741 69/246 (28%)
hnf4aXP_021325423.1 NR_DBD_HNF4A 62..142 CDD:143518 45/79 (57%)
NR_LBD_HNF4_like 158..379 CDD:132729 70/258 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577457
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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