DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and HNF4A

DIOPT Version :9

Sequence 1:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:XP_005260464.1 Gene:HNF4A / 3172 HGNCID:5024 Length:513 Species:Homo sapiens


Alignment Length:449 Identity:135/449 - (30%)
Similarity:206/449 - (45%) Gaps:104/449 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 GSNSASSNNNSAGDAQMAQAPNSAGGSAAAAVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYS 120
            |.:|:...:.|..:.....||||.|.||                   ||:||||||:|||||..|
Human    70 GVDSSPQGDTSPSEGTNLNAPNSLGVSA-------------------LCAICGDRATGKHYGASS 115

  Fly   121 CEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNA 185
            |:||||||:|:|||:..|:||.:|.|::||.:||:|:|||.:||...|||:||||.||.|     
Human   116 CDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDR----- 175

  Fly   186 AGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRA 250
            .....:|...||.|                                       ||..:::||..:
Human   176 ISTRRSSYEDSSLP---------------------------------------SINALLQAEVLS 201

  Fly   251 ETQCGDRALTFLRVGPYSTVQPDYK----GAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQV 311
                  |.:|    .|.|.:..|.:    .:::.:|:.:.:||..:||:|:.:|.|.::||||||
Human   202 ------RQIT----SPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQV 256

  Fly   312 ILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNS 376
            .||:|...|.|:......|:|..|                           .|.|...:...|:.
Human   257 ALLRAHAGEHLLLGATKRSMVFKD---------------------------VLLLGNDYIVPRHC 294

  Fly   377 AIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLD 441
            ...|.:|.:..|||.||.:..:.|.:|..|.:.|||||.::||.:|:....:|:..|.:|...|:
Human   295 PELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLE 359

  Fly   442 EHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPPP 500
            ::.........|||.:|||.||.|:||:.:..:.:...::.....::.|..|.|....|
Human   360 DYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGSP 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 47/75 (63%)
NR_LBD_RXR_like 237..480 CDD:132741 67/246 (27%)
HNF4AXP_005260464.1 NR_DBD_HNF4A 99..174 CDD:143518 47/74 (64%)
NR_LBD_HNF4_like 190..412 CDD:132729 68/258 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165144368
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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