DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment usp and rxrbb

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_571313.1 Gene:rxrbb / 30486 ZFINID:ZDB-GENE-990415-242 Length:422 Species:Danio rerio


Alignment Length:494 Identity:189/494 - (38%)
Similarity:260/494 - (52%) Gaps:125/494 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 LPGSNSASSNNNSAGDAQMAQAPNSAGG----------------------------SAAAAVQQQ 90
            ||.|.||.|:..|:.|:.::...:|.|.                            .|.::....
Zfish     4 LPPSTSAVSSPVSSVDSPLSAVSSSIGSPGVPGTPSIGYGPISNSQINSSMSVSRLHAVSSSDDV 68

  Fly    91 YPP--------NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCI 147
            .||        :.|:...|.:|:|||||:|||||||||||||||||||||||||:|.||:|:.|:
Zfish    69 KPPFGLKSVSGSGPMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECL 133

  Fly   148 IDKRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGG 212
            :|||||||||||||||||..||||||||||||:...                             
Zfish   134 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQKNKE----------------------------- 169

  Fly   213 GGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGA 277
                       ...|...::|.:.:..:|:|:|||...|.          |...:|.........
Zfish   170 -----------RDGDYECSSSANEEMPVEKILEAETAVEH----------RTDLHSDATGSPNDP 213

  Fly   278 VSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGG 342
            |:.:||..:||||.:||:|:.:|||:.||||||||||:|.|.|||||                  
Zfish   214 VTNICQAADKQLFTLVEWAKRVPHFSDVPLDDQVILLRAGWNELLIA------------------ 260

  Fly   343 GGGLGHDGSFERRSPGLQPQQLF-------------LNQSFSYHRNSAIKAGVSAIFDRILSELS 394
                    :|..||..::.:.|.             |.....:.|.|:..|.|.|:|||:|:||.
Zfish   261 --------AFSHRSISVKDEILLATGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELV 317

  Fly   395 VKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLL 459
            .||:.:.:|:.||.||:||:|:|||.:|:.|.:|:|:.||||||.|:.:|:.::|...||||:||
Zfish   318 CKMRDMQMDKTELGCLRAIVLFNPDAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAKLL 382

  Fly   460 LRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAP 498
            |||||||||.|||.:|||.|::..:.|::...:|.||:|
Zfish   383 LRLPALRSIGLKCLEHLFFFKLIGNTPIDTFLMEMLESP 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 62/75 (83%)
NR_LBD_RXR_like 237..480 CDD:132741 101/255 (40%)
rxrbbNP_571313.1 Modulating. /evidence=ECO:0000250 1..89 15/84 (18%)
Nuc_recep-AF1 <21..77 CDD:463363 5/55 (9%)
NR_DBD_RXR 89..164 CDD:143514 62/74 (84%)
Hinge. /evidence=ECO:0000250 156..178 11/61 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..182 7/60 (12%)
NR_LBD_RXR_like 183..403 CDD:132741 101/255 (40%)

Return to query results.
Submit another query.