DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and Rxrg

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_033133.1 Gene:Rxrg / 20183 MGIID:98216 Length:463 Species:Mus musculus


Alignment Length:483 Identity:200/483 - (41%)
Similarity:257/483 - (53%) Gaps:119/483 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 VKPDISQLNDSNNSSFSPKAESPVPFMQAMSMVHVLPGSNSASSNNNSAGDAQMAQAPNSAGGSA 83
            |.|..||||..|:.|.|...: |:|         .|||..:                        
Mouse    93 VAPPSSQLNVVNSVSSSEDIK-PLP---------GLPGIGN------------------------ 123

  Fly    84 AAAVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCII 148
                 ..||...|.|..||:|:|||||:||||||||||||||||||||:||||.|.||:|::|:|
Mouse   124 -----MNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLI 183

  Fly   149 DKRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGG 213
            |||||||||||||||||..|||||||||||||....|......:            |||.     
Mouse   184 DKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECA------------SSSH----- 231

  Fly   214 GGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQC---GDRALTFLRVGPYSTVQPDYK 275
                                  .|..:|||:|||...|.:.   ||           ..|:....
Mouse   232 ----------------------EDMPVERILEAELAVEPKTESYGD-----------MNVENSTN 263

  Fly   276 GAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAG 340
            ..|:.:|...:||||.:||:|:.:|||:.:.|:||||||:|.|.|||||                
Mouse   264 DPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIA---------------- 312

  Fly   341 GGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRR 405
                      ||..||..:| ..:.|......||:||..|||.:||||:|:||..|||.:.:|:.
Mouse   313 ----------SFSHRSVSVQ-DGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKS 366

  Fly   406 ELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISL 470
            ||.||:||:|:|||.:|:.:.:|:|..||||||.|:.:.:.::|...||||:|||||||||||.|
Mouse   367 ELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGL 431

  Fly   471 KCQDHLFLFRITSDRPLEELFLEQLEAP 498
            ||.:|||.|::..|.|::...:|.||.|
Mouse   432 KCLEHLFFFKLIGDTPIDSFLMEMLETP 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 63/75 (84%)
NR_LBD_RXR_like 237..480 CDD:132741 103/245 (42%)
RxrgNP_033133.1 Modulating. /evidence=ECO:0000250 1..138 19/83 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 16..53
Nuc_recep-AF1 25..134 CDD:463363 17/79 (22%)
NR_DBD_RXR 137..213 CDD:143514 63/75 (84%)
Hinge 205..230 13/36 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..232 9/59 (15%)
NR_LBD_RXR_like 233..441 CDD:132741 103/245 (42%)
Blue background indicates that the domain is not in the aligned region.

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