Protein Alignment usp and unc-55

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_001122482.2
• Gene: unc-55 / 192082
• WormBaseID: WBGene00006790
• Length: 370
• Species: Caenorhabditis elegans
• Alignment Length: 462
• Identity: 121/462 - (26%)
• Similarity: 188/462 - (40%)
• Gaps: 119/462 - (25%)

  Fly    56 GSNSASSNNNSAGDAQMAQAPNSAGGSAAAAVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYS 120
            ||:.|:|..||:.||..                               |.:|||::||||||.:|
 Worm     4 GSSGAASLGNSSPDATD-------------------------------CVVCGDKSSGKHYGQFS 37

  Fly   121 CEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNA 185
            |||||.||||::|:.|:|.||..:||.||.:.||:|||||..||:..||::|..:....:.|.:|
 Worm    38 CEGCKSFFKRSIRRSLSYTCRATKNCAIDVQHRNQCQYCRLTKCIRMGMRKEGRRSNETQTAVSA 102

  Fly   186 A--GRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQ 248
            .  |||..:                           |.|     .|..|...|.
 Worm   103 VQRGRLPVT---------------------------MPS-----LFPPNMFLRS----------- 124

  Fly   249 RAETQCGDRALTFLRV--GPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQV 311
                     ...|:.|  .|..|.|........::.:...:.:|..|.:||  ...:.:...||:
 Worm   125 ---------PFPFMSVPFNPLMTAQFTKPSIKESIFEFAAQTIFATVNWAR--TSMSNLVKGDQL 178

  Fly   312 ILLKAAWIELLIANVAWCSI----------VSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFL 366
            |||:.:|..:.|..:|..:.          |:........|...||.....|.:|.. :|:::|.
 Worm   179 ILLRHSWTPIFIFALAQSNFALNLSTHLTAVTATAASTENGSSSLGSKSEDEEKSEE-KPERVFD 242

  Fly   367 NQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEM 431
            ...|.         |..|..|        |::..:||..|.|.|:|::|::.|...::.:.:||.
 Worm   243 EPQFQ---------GFQAKID--------KIRDFHLDVVESSSLRAVLLFSCDEEALEEKGKIEE 290

  Fly   432 CREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLE 496
            ..||:.:.:||:|::....:  |:.|:...|..|:|........||..|:....|||.:..:.|.
 Worm   291 IVEKLKSAVDEYCKMNKRSE--RYHQICECLQLLKSTRNLPISRLFFSRLLGTTPLETILSDLLI 353

  Fly   497 APPPPGL 503
            .||||.|
 Worm   354 TPPPPTL 360

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	41/75 (55%)
		NR_LBD_RXR_like	237..480	CDD:132741	52/254 (20%)
unc-55	NP_001122482.2	NR_DBD_COUP_TF	21..89	CDD:143516	40/67 (60%)
		NR_LBD_F2	148..325	CDD:132728	44/198 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	176	1.000	Inparanoid score	I2694
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X118
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.960