DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nhr-247

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_506798.1 Gene:nhr-247 / 191500 WormBaseID:WBGene00014193 Length:337 Species:Caenorhabditis elegans


Alignment Length:399 Identity:77/399 - (19%)
Similarity:136/399 - (34%) Gaps:104/399 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQY 158
            :.|....:..|.:||...:|..||..:|.||..||:|.:.......|..|.||.|....:|.|:.
 Worm     4 SEPSETPQKRCLVCGGTPNGSRYGALACLGCIVFFRRAISNANVKNCDNNSNCKIGFETKNCCRS 68

  Fly   159 CRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSG 223
            ||.||||..||..:|:|.....|.|.              |..|...:.:.              
 Worm    69 CRLQKCLQVGMNPKAIQHRDLIGPRK--------------PVKVEPETQKS-------------- 105

  Fly   224 NGSDDFMTNSVSRDFSIERIIEAE-------QRAETQCGDRALTFLRVGPYSTVQPDYKGAVSAL 281
                           .:..::|.:       |:.:.|.|...                |.|.|..
 Worm   106 ---------------KLHHLLELQRKQWSRNQKHQAQTGSFK----------------KQADSDD 139

  Fly   282 CQVVNKQLFQ-MVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGG 345
            .:.|....|| .:.:|.....|.::..|.:.:::....|..::...|:.:....::|        
 Worm   140 VRFVMSLGFQNALSWANHFETFTKLSEDQKALVMSEFGIAFILIEQAFKTAEDTEEG-------- 196

  Fly   346 LGHDGSFERRSPGLQPQQLFLNQSF---SYHRNSAIKAGVSAIF-DRILSELSVKMKRLNLDRRE 406
                            ..:..|.:|   |..||...:..:::.| |.:...||..::.|.||:.|
 Worm   197 ----------------CWILQNDTFLEISDTRNVQGQKRINSEFADFLFKTLSEPIRSLQLDKFE 245

  Fly   407 LSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLE-----HPGDDGRFAQLLLRLPALR 466
            ...||.::|.:   :...|:..:....|....|:....:.|     ..|.. ||.:::|.|.::|
 Worm   246 CVVLKTMVLLS---QSFPSQLYLPRFEENRKNCMKTLMKYELRKFPETGSQ-RFGEIILLLSSVR 306

  Fly   467 SISLKCQDH 475
            ....:..:|
 Worm   307 CAVKQLYNH 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 29/75 (39%)
NR_LBD_RXR_like 237..480 CDD:132741 43/256 (17%)
nhr-247NP_506798.1 NR_DBD_HNF4A 14..88 CDD:143518 29/73 (40%)
HOLI 144..308 CDD:214658 34/191 (18%)

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