Protein Alignment usp and nhr-236

DIOPT Version :10

• Sequence 1: NP_476781.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_500190.3
• Gene: nhr-236 / 189677
• WormBaseID: WBGene00021417
• Length: 283
• Species: Caenorhabditis elegans
• Alignment Length: 358
• Identity: 88/358 - (24%)
• Similarity: 133/358 - (37%)
• Gaps: 121/358 - (33%)

  Fly   104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCG 168
            |.:|||||||:||||.||:||:|||||::|::|.|:|:|:.:|:||..:||:||.||:|||:|..
 Worm    13 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYSCKESGDCVIDVTRRNQCQACRFQKCITVA 77

  Fly   169 MKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNS 233
            |.|.|||.||                                         :|:
 Worm    78 MNRHAVQHER-----------------------------------------LGA----------- 90

  Fly   234 VSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARM 298
                        ..:...||...:|....:.|....:.| ....:|.|..|        :.:...
 Worm    91 ------------PPEPKPTQTLIKAKRIRKPGIPEVIDP-ISDPISCLSAV--------IRWWSS 134

  Fly   299 MPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQ 363
            :|.....|..|:.|:....|..|.:.:|. |.           .|..|.:|.:.|:
 Worm   135 LPPANGFPASDRRIIFSNCWHSLFLFHVI-CQ-----------SGTSLVNDCNNEK--------- 178

  Fly   364 LFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAE 428
                                      |..:|..:|.|||:..|...:..||:|..:...::|::|
 Worm   179 --------------------------LRSISKTIKALNLNVVEQWAITVIIIYRSEDGRLESKSE 217

  Fly   429 IEMCREKVYACLDE-HCRLEHPGDDGRFAQLLL 460
            ....:......|.| |..........|.|||||
 Worm   218 TLSTQIGAMQILAENHAARVFQSRSTRCAQLLL 250

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_476781.1	NR_DBD_RXR	102..178	CDD:143514	44/73 (60%)
		NR_LBD_RXR_like	237..480	CDD:132741	41/225 (18%)
nhr-236	NP_500190.3	NR_DBD_PNR_like_1	13..88	CDD:143538	46/115 (40%)