DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nhr-221

DIOPT Version :9

Sequence 1:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_503987.1 Gene:nhr-221 / 188826 WormBaseID:WBGene00020748 Length:398 Species:Caenorhabditis elegans


Alignment Length:409 Identity:84/409 - (20%)
Similarity:138/409 - (33%) Gaps:132/409 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRN----RCQ 157
            |..||  |.:|...|.|.|..|.:|:|||.||:|.........|..:.:| .|..:||    ||:
 Worm    29 LKPSK--CMVCVRPAHGYHCDVATCKGCKTFFRRMCLLRGEIKCSTSGDC-YDLEKRNSPLLRCR 90

  Fly   158 YCRYQKCLTCGMKREAV---------------QEERQRGARNAAGRLSASGGGSSGPGSVGGSSS 207
            .||:::||..||..:|:               .|::.:|..:....|.|.               
 Worm    91 PCRFKRCLLVGMNPKALIIDGSNILGEKQVHFNEQQIQGTIDVLSHLEAK--------------- 140

  Fly   208 QGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIE-AEQRAETQCGDRALTFLRVGPYSTVQ 271
                              ::.|...:.:.|::..|:.: ....::....|:..||          
 Worm   141 ------------------TEQFSKCAYNPDWTNIRLKDLILSPSKLSMSDKVGTF---------- 177

  Fly   272 PDYKGAVSALC-------QVVNK---------------QLFQMVEYARMMPHFAQVPLDDQVILL 314
            ||:     .||       |:|::               .|...|||.:....|..:...||:.||
 Worm   178 PDW-----PLCPNYEFPDQIVHRDIQSFSPHRKQWRFSNLMTAVEYTKTFSFFHDLSFQDQINLL 237

  Fly   315 KAAWIELLIANVAWCSIVS-LDDGGAGGGGGGLGHDGSFERRSPGL-QPQQLFLNQSFSYHRNSA 377
            |...|.|...|..:.::.: .||         |......:|  ||: :|........|.      
 Worm   238 KHVVIGLANFNTTYYTLKNKFDD---------LRQPDGTQR--PGVNEPHYCAHTVPFG------ 285

  Fly   378 IKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAE--IEMCREKVYACL 440
                              .|||:.:...|...||.:.:.||.:..:...|:  ||..|......|
 Worm   286 ------------------PMKRIKIQFNEFLLLKILFVCNPAVPNLSKHAQFVIEKERHHYSNIL 332

  Fly   441 DEHCRLEHPGDDGRFAQLL 459
            .::|...:.....||.:|:
 Worm   333 LKYCLQNYSYGPTRFVELI 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 28/94 (30%)
NR_LBD_RXR_like 237..480 CDD:132741 49/250 (20%)
nhr-221NP_503987.1 ZnF_C4 33..105 CDD:197701 27/74 (36%)
NR_LBD 176..>238 CDD:299703 16/76 (21%)
HOLI 209..360 CDD:214658 38/178 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158244
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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