DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nhr-209

DIOPT Version :9

Sequence 1:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_506036.2 Gene:nhr-209 / 187663 WormBaseID:WBGene00011100 Length:418 Species:Caenorhabditis elegans


Alignment Length:478 Identity:103/478 - (21%)
Similarity:185/478 - (38%) Gaps:137/478 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 SAAAAVQQQYP------PNHPLSGSK--HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 138
            |:::|:::..|      |...||.::  ..|::|.:.|.|.||.|.||.|||.||:||:.....:
 Worm    16 SSSSALEKSIPEKDLKKPYQLLSKNQFPEKCAVCKNAAIGYHYNVPSCNGCKTFFRRTILNGKRF 80

  Fly   139 ACRENRNCI----IDKRQRNRCQYCRYQKCLTCGMKREAVQ------------EERQRGARNAAG 187
            .|..::||:    .|:.|| .|:.||:.:|:..||...|::            ||..|..:|...
 Worm    81 ICMNHKNCLDEIESDESQR-LCKGCRFARCIEVGMDSTAIRASVKTVEGKYLLEEVLRKQKNRKI 144

  Fly   188 RLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAET 252
            ::..                                  .|:|::..:.:...:|..||....:..
 Worm   145 QMQQ----------------------------------KDNFLSLIIKQLSHLEDQIEKLHFSTI 175

  Fly   253 QCG---DRALT-FLRVGP------YSTVQPDYKGAVSALCQV-VNKQLFQMVEYARMMPHFAQVP 306
            ..|   .|:|: .|...|      ...:.|....|...:|.. ::..|...||.::....|:::.
 Worm   176 PDGFEDMRSLSEILLYNPVFDSSRIPNLTPVSNKAPKLICMTYMHSALLAAVEASKTFEFFSKIS 240

  Fly   307 LDDQVILLKAAWIELLIANVAWCSI---------VSLDDGGAGGGGGGLGHDGSFERRSPGLQPQ 362
            .:.::||::  .:.|:.:|:...|.         :.|.||...|..||                 
 Worm   241 HEARMILIR--HVSLIGSNMMSASFSMHHRKSDELLLPDGTVFGSIGG----------------- 286

  Fly   363 QLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMK---------RLNLDRRELSCLKAIILYNP 418
                                 .:...:|.|:..|.:         |:|:||.|...||||::.||
 Worm   287 ---------------------CLASEVLGEIKYKNQLQQILHAFLRINVDRVEYMILKAILMRNP 330

  Fly   419 DIRG--IKSRAEIEMCREKVYACLDEHCRLEHPGDDG--RFAQLLLRLPALRSISLKCQD-HLFL 478
            .:.|  :..:..||..|.:....|.|:..|.|....|  ||..|:...|.:.:.|.|.:| ::|:
 Worm   331 SVPGLTLDDQLIIENERNQYAKALLEYTILHHGVLSGPARFGSLIAINPIIETQSKKQKDVYVFM 395

  Fly   479 FRITSDR----PLEELFLEQLEA 497
            ..:::.|    |.:.||.|.:::
 Worm   396 KTLSAQRECSHPPKSLFDEVMDS 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 30/91 (33%)
NR_LBD_RXR_like 237..480 CDD:132741 57/276 (21%)
nhr-209NP_506036.2 NR_DBD_HNF4A 46..120 CDD:143518 29/74 (39%)
HOLI 219..384 CDD:214658 42/204 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158258
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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