Protein Alignment usp and nhr-208

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_506034.2
• Gene: nhr-208 / 187662
• WormBaseID: WBGene00011099
• Length: 410
• Species: Caenorhabditis elegans
• Alignment Length: 418
• Identity: 97/418 - (23%)
• Similarity: 153/418 - (36%)
• Gaps: 134/418 - (32%)

  Fly    93 PNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNR-- 155
            |.|.|...   |.|||:.|.|.||.:.||.|||.||:|||......||::...|:.::...||
 Worm    35 PRHNLPSK---CEICGNPAIGYHYDIASCNGCKAFFRRTVITGRQVACKKWGTCLEEEIPINRRI 96

  Fly   156 CQYCRYQKCLTCGMKREAVQEE---------RQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGG 211
            |..||:.||:..||...|::.|         .|......|.:|.
 Worm    97 CPGCRFSKCVKVGMNPRAIRAEISSNGEILKNQLLKNREADKLV--------------------- 140

  Fly   212 GGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIE---AEQRAETQCGDRALT-FLRVGPY----- 267
                    |.|...::|.::.|:|:...||..|:   ..:.....|..|.:| .|:..|.
 Worm   141 --------MLSPKTAEDDLSISISKLSLIENKIDDLFNSKWPSNYCDWRTVTEILKAHPILEMSK 197

  Fly   268 --------STVQPDYKG-----AVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWI 319
                    :.:.||:.|     :::||            |:.:|:..|.::.:|.         :
 Worm   198 IPNLSFQPNQLFPDHAGFAHNASLAAL------------EFTKMLDIFPKLSIDT---------V 241

  Fly   320 ELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSF--ERRSPGLQPQQLFLNQSFSYHRNSAIKAGV 382
            :.|:.:                   ||...||.  .|||     .|.|  .|.:..|.....:|.
 Worm   242 QKLVRH-------------------GLFMCGSMMTSRRS-----IQKF--NSDTLRRTDGTISGK 280

  Fly   383 SA------------IFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAE--IEMCR 433
            .|            |..|:|.    ...|:.|:..|...||.|.:.||.:..:.::.:  ||..|
 Worm   281 PAKSWNGVWVDHRKIVQRVLR----AFLRIKLNDVEYLFLKVITILNPAVSDLFAQDQKIIERER 341

  Fly   434 EKVYACLDEHCRLEHPGDDG--RFAQLL 459
            .:...||..:|..|:..::|  |||.:|
 Worm   342 NRFAQCLLTYCLREYAENNGPSRFASVL 369

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	32/86 (37%)
		NR_LBD_RXR_like	237..480	CDD:132741	54/263 (21%)
nhr-208	NP_506034.2	ZnF_C4	42..112	CDD:197701	30/72 (42%)
		HOLI	216..376	CDD:214658	43/205 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160158262
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.840