Protein Alignment usp and nhr-32

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_510201.2
• Gene: nhr-32 / 187178
• WormBaseID: WBGene00003626
• Length: 414
• Species: Caenorhabditis elegans
• Alignment Length: 422
• Identity: 91/422 - (21%)
• Similarity: 156/422 - (36%)
• Gaps: 100/422 - (23%)

  Fly    93 PNH-PLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRC 156
            |:| .:......|.:|||.|.|.||||.||.||..||:|.|..::::.||....|.:||..|..|
 Worm     8 PSHIEILSHTEQCVVCGDAADGFHYGVRSCRGCNAFFRRAVTFNMSFTCRRGGRCPVDKNARCAC 72

  Fly   157 QYCRYQKCLTCGMKREAVQEERQRGARNAAG---------RLSASGGGSSGPGSVGGSSSQGGGG 212
            :.||..||...||.::|||.:|:....|.:.         ||   ||..:.|.....|.....|.
 Worm    73 RACRLAKCYAVGMDKKAVQPKREVHTSNGSFDQNDPDYDLRL---GGTRTSPSYELSSDMTSPGS 134

  Fly   213 G--------GGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCG-------DRALTFL 262
            .        ...:..:.....||..:......||..::    .:|....||       ::.:| |
 Worm   135 AFTPLNINLADFTPAIPPSPPSDSSLIVRQVYDFMEQK----RRRRAMLCGSLEEILSEQEMT-L 194

  Fly   263 RVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQV-PLDDQVILLKAAWIELLIANV 326
            |   :.....|:       ..:...|:..|.|:...:|.|..: ..:|:..||:|..::.::.
 Worm   195 R---HPATSEDF-------TTIFQAQMVLMFEWVEKLPEFRMLCDHNDKTKLLRAFALKYMLL-- 247

  Fly   327 AWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGV------SAI 385
                                  |..:.....|.:.:.:.:|       |:.|..||      |.:
 Worm   248 ----------------------DNVYHTYELGFRDRLVLVN-------NNYIVPGVPINFKGSDV 283

  Fly   386 FDR--------------ILSELSVKMKRLNLDRRELSCLKAIILYNP---DIRGIKSRAEIEMCR 433
            .|.              :::||.:.:...|:...|:..::.|:.:||   .:..:......|.|.
 Worm   284 VDENQMRDIMFGEPMRALINELVLPIGSQNMLYGEIMTIRRIMFWNPGNVQLSEMAKALSAEACN 348

  Fly   434 EKVYACLDEHCRLEHPGD-DGRFAQLLLRLPA 464
            ..:.. |.::...|...| :.|...:||.||:
 Worm   349 VAMKE-LQQYLISEGVDDIEARIKFILLLLPS 379

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	34/75 (45%)
		NR_LBD_RXR_like	237..480	CDD:132741	44/260 (17%)
nhr-32	NP_510201.2	NR_DBD_HNF4A	20..95	CDD:143518	34/74 (46%)
		NR_LBD	201..382	CDD:132726	36/218 (17%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160158241
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.840