DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nhr-129

DIOPT Version :9

Sequence 1:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001122887.1 Gene:nhr-129 / 183635 WormBaseID:WBGene00003719 Length:420 Species:Caenorhabditis elegans


Alignment Length:410 Identity:85/410 - (20%)
Similarity:143/410 - (34%) Gaps:116/410 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRN---RCQYCRYQKCL 165
            |.:||..|||.||.|.:|.|||.||:|.|.....:.|:.|.:| .|...|:   :|:.||..||.
 Worm    30 CFVCGGSASGYHYDVPACNGCKTFFRRYVISKRLFTCKLNDDC-FDLSTRDVPVKCRACRINKCF 93

  Fly   166 TCGMKREAVQEERQRG--ARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDD 228
            ..||...|::.::...  .:....|.:..|..:.                           ....
 Worm    94 AVGMNPHALEVDKTNTDCLKEVTKRKNMIGNDAV---------------------------NEKQ 131

  Fly   229 FMTNSV-SRDFSIERIIEAEQRAETQCGD-------------RALTFL-----------RVGPY- 267
            .:.||: |.:..|::|.:.....|.:...             |.|.|:           :.||. 
 Worm   132 LVLNSLESMENKIQKIADMLTYLELKLDQFRASSYNPHWAEVRGLEFVLNSTNRISLADKFGPMP 196

  Fly   268 ------STVQPDYKGAVSALCQVVNK--------------QLFQMVEYARMMPHFAQVPLDDQVI 312
                  :.:.|.....:|....|:..              .:...:|||:....|.::...||:|
 Worm   197 GWPLLDNNLSPSRPPPLSHEKLVIGGPPPYSPKKKHWLYFNMLATIEYAKTFMFFHELLPRDQLI 261

  Fly   313 LLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGH-DGSFERRSPGLQPQQLFLNQSFSYHRNS 376
            |::...:..:...|::.|:....|...        | ||:.          |:..||.: |..| 
 Worm   262 LIRYTTLACVNLLVSFSSVSKKYDTAV--------HPDGTL----------QMHRNQEY-YSSN- 306

  Fly   377 AIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMC--REKVYAC 439
                 |.:|         :.:.|..:.:.|...||||.|.||.:..:...|::.:.  |:|....
 Worm   307 -----VMSI---------IPLIRYQVQQIEYVLLKAICLCNPAVPDLSKHAQLLLAEERQKYSEA 357

  Fly   440 LDEHCRLEHPGDDGRFAQLL 459
            |.:||.........||..|:
 Worm   358 LLDHCIRNIGNGPSRFTDLI 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 30/76 (39%)
NR_LBD_RXR_like 237..480 CDD:132741 50/271 (18%)
nhr-129NP_001122887.1 ZnF_C4 30..99 CDD:197701 29/69 (42%)
HOLI 236..386 CDD:214658 39/176 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158246
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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