DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nhr-167

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_510004.1 Gene:nhr-167 / 183613 WormBaseID:WBGene00008208 Length:343 Species:Caenorhabditis elegans


Alignment Length:385 Identity:74/385 - (19%)
Similarity:134/385 - (34%) Gaps:121/385 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY-ACRENRNCIIDKRQRNRCQYCRYQKCLTC 167
            |::||...:..:|.|.||..||.||:|.:.:.:.. .|.....|........:|..||:||||..
 Worm     8 CAVCGRFTTEFNYSVLSCNSCKIFFRRLIVRTVPIKKCFRGERCFEKTPYIFKCTSCRFQKCLYV 72

  Fly   168 GMKREAV-----QEERQRGA------RNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMG 221
            ||...:.     |.:.||.|      ||                                     
 Worm    73 GMTLPSYLLVLEQNKEQRLAITIDCVRN------------------------------------- 100

  Fly   222 SGNGSDDFMTNSVSRDF--SIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQV 284
            :.|...|.:.|....:.  :::.|:|..:...|:..:.            ::.|::......|..
 Worm   101 THNKRMDSLFNFFVTEMNPNVDDIVELNKITYTKRDEH------------IRMDFQTWAFHSCVT 153

  Fly   285 VNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIE---LLIANVAWCS---IVSLDDGGAGGGG 343
            .       :::.:..|....:...||:||||.::::   |:.|..|:.|   .:|..|       
 Worm   154 T-------IDFMKQFPFVNLLRSTDQMILLKESYVKLGALISATRAYSSKKQCISFPD------- 204

  Fly   344 GGLGHD------GSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNL 402
               |.|      .:..:.||.|:                          :||...:..|::.||:
 Worm   205 ---GTDCLPKTQWTVPKISPNLE--------------------------NRIRCRVIDKLRELNI 240

  Fly   403 DRRELSCLKAIILYNPDIRGIKSRAEIEMCR-EKVY-ACLDEHCRLEH-PGDDGRFAQLL 459
            ...|...|..::..||.|..:....::.:.. :|:| :.|..:|.|.: .....||::||
 Worm   241 QNDEFYLLSVLLFCNPAITNLSENGQLLLTSYQKMYSSALLYYCLLTYQKSGPSRFSELL 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514 24/79 (30%)
NR_LBD_RXR_like 237..480 CDD:132741 42/240 (18%)
nhr-167NP_510004.1 ZnF_C4 7..75 CDD:197701 22/66 (33%)
HOLI 147..306 CDD:214658 38/197 (19%)

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