DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nhr-154

DIOPT Version :9

Sequence 1:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_506037.2 Gene:nhr-154 / 182565 WormBaseID:WBGene00007547 Length:469 Species:Caenorhabditis elegans


Alignment Length:511 Identity:111/511 - (21%)
Similarity:186/511 - (36%) Gaps:139/511 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EEVKPDISQLNDSNNSSFSPKAESPVPFMQAMSMVHVLPGSNSASSNNNSAGDAQMAQAPNSAGG 81
            :..:||...::.|:              .||....| ||......:.|..:     |..|:.:..
 Worm    20 DRYQPDFKMIDYSH--------------QQATHEYH-LPDQEVFQNQNEFS-----ASPPDISSP 64

  Fly    82 SAAAAVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNC 146
            .|...:.:..|.|.  ..||  |.:|.:.|.|.||.|.||.|||.||:||:.....:.|.:.:.|
 Worm    65 FADEKIYKSLPRNK--CPSK--CLVCRNPAIGYHYDVPSCNGCKTFFRRTIITGRKFTCAKQKKC 125

  Fly   147 I-----IDKRQRNRCQYCRYQKCLTCGMKREAVQEE--------------RQRGARNAAGRLSAS 192
            :     :|..:| .|:.||:.||:..||...|:|.|              .||.:......|..:
 Worm   126 MDGTEPVDMSKR-LCRACRFAKCVEVGMNPMAIQAEVKTDEGKVLRSEVLNQRESLGVVSSLIVT 189

  Fly   193 GGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDR 257
                                             .:|.::..:.:...:|..:|...|:....|.|
 Worm   190 ---------------------------------EEDLLSRMIEKLTFVESKVEPLHRSGMPPGYR 221

  Fly   258 AL----TFLRVGPYSTVQ--PDYKGAVSA----------LCQVVNKQLFQMVEYARMMPHFAQVP 306
            .:    ..|...|...|.  |:.|...|.          ....|:......:|.::|....:|:.
 Worm   222 DIRKLEEILDSKPVLVVTDIPNLKFCPSPCANEKRPRRHFTNYVHTSYLASLESSKMFEFSSQLD 286

  Fly   307 LDDQVILLKAAWIELLIANV--AWCSIVSL-------DDGGAGGGGGGLGHDGSFERRSPGLQPQ 362
            |:.:::|:|.|  .|:.:|:  |:.||..:       .||...      ||...|:|        
 Worm   287 LESRILLMKHA--TLICSNMMNAFFSINEMKSDILRHPDGSMS------GHMRKFDR-------- 335

  Fly   363 QLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKS-- 425
                       .|..:...|..|...:::.|:.|     :|:.|....|||:|.||.:.|:.|  
 Worm   336 -----------ENDVMTDHVKLIQKTLITFLNHK-----VDKIEYLLFKAIMLCNPAVPGLDSWN 384

  Fly   426 RAEIEMCREKVYACLDEHCRLEHPGDDG--RFAQLLLRLPALRSISLKCQD-HLFL 478
            :..||..|.:....|..:|.|:|....|  |||.:|...|.:.:.|...:| |:::
 Worm   385 QEIIEKERNQYVKALLNYCLLQHGKLQGPTRFATILAMAPIIENQSKNQKDFHVYI 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 30/94 (32%)
NR_LBD_RXR_like 237..480 CDD:132741 61/272 (22%)
nhr-154NP_506037.2 NR_DBD_HNF4A 83..160 CDD:143518 29/77 (38%)
HOLI 266..429 CDD:214658 46/194 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158259
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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