DRSC/TRiP Functional Genomics Resources

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Protein Alignment usp and nhr-152

DIOPT Version :10

Sequence 1:NP_476781.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_504990.2 Gene:nhr-152 / 182533 WormBaseID:WBGene00015705 Length:383 Species:Caenorhabditis elegans


Alignment Length:160 Identity:38/160 - (23%)
Similarity:66/160 - (41%) Gaps:35/160 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   829 VNVPVFAIFVVAFLIFLVGLLRYFLPALHKISSLEEQKRDLFLCGSIEDFEARIMVRTFGKTRQT 893
            :|||....|:...|:.:|    |....|::.|.::.:....||...: |.||..:|   .|..|.
 Worm    42 INVPTSQCFLNYVLLAIV----YGSIMLYRRSDIKAKWYYYFLLAFV-DVEANFLV---VKAYQY 98

  Fly   894 LAKTSVNADILTRC-RMARYSTLRWISLRTEF----ISNLMICM--CFFI------------ASI 939
            .:.|||   :|..| .:.....|.|..|:|::    ||.:.||:  .|.:            .|.
 Worm    99 TSLTSV---MLLDCWAIPCVLVLTWFYLKTKYRLMKISGVFICIVGVFMVVFSDVHAGDRAGGSN 160

  Fly   940 CLKVDYIGNAQFALSVASILCISELVSTFI 969
            .:|.|::     .|:.|::..:|.....|:
 Worm   161 PVKGDFL-----VLAGATLYAVSNTSEEFL 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
uspNP_476781.1 NR_DBD_RXR 102..178 CDD:143514
NR_LBD_RXR_like 237..480 CDD:132741
nhr-152NP_504990.2 ZnF_C4 20..92 CDD:197701 14/54 (26%)
HOLI 197..349 CDD:214658
Blue background indicates that the domain is not in the aligned region.

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