Protein Alignment usp and nhr-149

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_504874.2
• Gene: nhr-149 / 182174
• WormBaseID: WBGene00015397
• Length: 375
• Species: Caenorhabditis elegans
• Alignment Length: 412
• Identity: 88/412 - (21%)
• Similarity: 144/412 - (34%)
• Gaps: 137/412 - (33%)

  Fly   102 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRN----RCQYCRYQ 162
            ||||||...|.|.||.|.||:|||.||:|.....:...|..|..|....|:.|    :|:.||:|
 Worm     5 HLCSICSRPAQGYHYDVISCKGCKTFFRRMWLSKIKEMCPLNNKCFDFNRRINMSLSKCRACRFQ 69

  Fly   163 KCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSD 227
            :||..||...|:|.:                                             ||...
 Worm    70 RCLNVGMNPAAIQCD---------------------------------------------GNPKK 89

  Fly   228 DFMTNSVSRDF-----SIERIIEAEQRAETQC-----------------------GDRALTFLRV 264
            |   :|..|||     .|:.||:.....|.:.                       |..:|:...:
 Worm    90 D---SSHFRDFDSIDEKIKNIIDTLTYVELKLENYRKSAYNPVLSLSTGLDDLIEGSCSLSLAEI 151

  Fly   265 -GPYSTVQ---PDYKGAVSAL--------CQVVNKQ------LFQMVEYARMMPHFAQVPLDDQV 311
             ||.|...   .:::...|::        |.|.|::      :...:||.:....|.::...|:.
 Worm   152 YGPMSGWPLGFEEHQLPSSSMRNVSCEEPCPVSNRKYWTHCNMLTTIEYFKTFKFFHELSSRDKF 216

  Fly   312 ILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNS 376
            :|.:...:.....:::..::....|       ..|..|||       :||:|        ..|:.
 Worm   217 VLARHTLLLCQNLHISHYTVSHNFD-------SCLQPDGS-------MQPKQ--------DERHY 259

  Fly   377 AIKAGVSAIFDRILSELSVK-MKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACL 440
            .|            :.:|:: :.|..:...|...||||...||.:..:...|:..:.:|: |...
 Worm   260 PI------------AMMSIEPLVRCKIQHVEYVLLKAICFCNPAVPELSQNAQRILAKER-YCFA 311

  Fly   441 D---EHCRLEHPGDDGRFAQLL 459
            |   .||...:....|.||:|:
 Worm   312 DILINHCLRNYTDGPGHFAELI 333

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	34/79 (43%)
		NR_LBD_RXR_like	237..480	CDD:132741	49/273 (18%)
nhr-149	NP_504874.2	ZnF_C4	6..78	CDD:197701	31/71 (44%)
		HOLI	190..342	CDD:214658	34/179 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160158247
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.840