Protein Alignment usp and fax-1

DIOPT Version :10

• Sequence 1: NP_476781.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_508547.1
• Gene: fax-1 / 180609
• WormBaseID: WBGene00001400
• Length: 419
• Species: Caenorhabditis elegans
• Alignment Length: 424
• Identity: 102/424 - (24%)
• Similarity: 162/424 - (38%)
• Gaps: 112/424 - (26%)

  Fly     1 MDNCDQDASFRLSHIKEEVKPDISQLNDSNNSSFSPKAESPVPFMQAMSMVHVLPGSNSASSNNN 65
            |.:.|:..:|..|...||.|..|..:....|   :|....|..|...:...|:  .:..|.|.|.
 Worm     1 MSDEDEPLNFSTSKATEESKEGILGVRSIFN---TPLLFPPPMFNAGVISPHI--AAALAMSFNQ 60

  Fly    66 SAGDAQMAQ-------APNSAGGSAAAAVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEG 123
            ...:|.::.       :.||.  .:..:|:...||.  .|.....|::|||.:||||||:.:|.|
 Worm    61 QRMNASVSPPLDHTTISVNSF--PSMGSVKTDSPPT--ASSPTLCCAVCGDVSSGKHYGILACNG 121

  Fly   124 CKGFFKRTVRKDLTYACRENR-NCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAG 187
            |.|||||:||:.|.|.|:... ||::||..||:||.||.:|||..||.::|||.|||  .||.|
 Worm   122 CSGFFKRSVRRRLIYRCQAGTGNCVVDKAHRNQCQACRLKKCLNKGMNKDAVQNERQ--PRNTA- 183

  Fly   188 RLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAET 252
                    :..|.......:......|.||..||.        :|.:.|:.|.....:.:...|.
 Worm   184 --------TIRPALDMDPQNFFREYAGAVSAIMGH--------SNMMKREDSPSSASDGKTEDEK 232

  Fly   253 QCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAA 317
            :                         .:|.:....||..::::|:....|..:...::..::...
 Worm   233 K-------------------------DSLQETTMSQLESVLQWAQQFRLFTVLTNSEKRQIILTQ 272

  Fly   318 WIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGV 382
            |..||.  ::.|                                                 :...
 Worm   273 WPRLLC--ISLC-------------------------------------------------EQAE 286

  Fly   383 SAIFDRILSELSVKMKRLNLDRRELSCLKAIILY 416
            ...||..|:.|.:|.:||::...|.:|||||.::
 Worm   287 DVSFDDHLTSLMLKFRRLDVSPAEFNCLKAITIF 320

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_476781.1	NR_DBD_RXR	102..178	CDD:143514	41/76 (54%)
		NR_LBD_RXR_like	237..480	CDD:132741	24/180 (13%)
fax-1	NP_508547.1	NR_DBD_PNR	94..185	CDD:143528	48/103 (47%)
		NR_LBD	243..>320	CDD:472173	21/127 (17%)