Protein Alignment usp and nhr-60

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_506930.1
• Gene: nhr-60 / 180059
• WormBaseID: WBGene00003650
• Length: 443
• Species: Caenorhabditis elegans
• Alignment Length: 453
• Identity: 96/453 - (21%)
• Similarity: 157/453 - (34%)
• Gaps: 140/453 - (30%)

  Fly    93 PNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRN--- 154
            |..|..     |.|||:.|:|.||.|.||.|||.||:|....|.::.|:...:| .|..:|.
 Worm    41 PQRPTE-----CLICGNSANGHHYDVASCNGCKTFFRRMCVSDRSFECKAKGDC-FDLTKRKVPL 99

  Fly   155 RCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGG 219
            :|:.||:|||::.||...|::.: ::.|.::..:..........|
 Worm   100 KCRACRHQKCISVGMNPLAMEVD-EKAASSSNFKKLVKRAQDLEP-------------------- 143

  Fly   220 MGSGNGSDDFMTNSVSRDFSIERIIEA-------------------------------------E 247
                  .||....:|.....|.:.:::                                     |
 Worm   144 ------DDDCQVTAVVNKMQIVKPVDSIESKMQNITDMLVYLETKVERFRKSAYNPHWNEFSGLE 202

  Fly   248 QRAETQC----GDR-------ALTFLRVGPYSTVQPDYKGAV--SALCQVVNK----QLFQMVEY 295
            ...|::|    |||       .|...::||....:|...|..  |...|.:.:    .|...|||
 Worm   203 YLLESECRIGFGDRFGPMPGWPLRRDQLGPPRLPKPPSPGKPRDSQHSQNIKQWFFYNLLTTVEY 267

  Fly   296 ARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRS---- 356
            |:....|.::...|::||.:...:.....::::.||                      ||:
 Worm   268 AKTFMFFHRLSSRDKLILTRHVALACTNLHISYSSI----------------------RRNLEVI 310

  Fly   357 ---PGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNP 418
               .|.:|      .:|:....||....|:.:.            |..:...|...||||:|.||
 Worm   311 IEPDGSEP------MTFNDTHYSASVMSVAPLI------------RCQIKNIEYLLLKAIVLCNP 357

  Fly   419 DIRGI--KSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPAL-RSISLKCQDHLFL 478
            .:..:  ||:..|.:.|.|....|..:|..........||||:..:..| |...::...||.|
 Worm   358 AVPDLSAKSQEIISLERVKYADALFNYCLRSRSDGPPHFAQLIQIIDVLERQQRMQKDLHLLL 420

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	31/78 (40%)
		NR_LBD_RXR_like	237..480	CDD:132741	58/306 (19%)
nhr-60	NP_506930.1	ZnF_C4	47..117	CDD:197701	30/70 (43%)
		HOLI	257..409	CDD:214658	40/191 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160158245
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.840