Protein Alignment usp and nhr-93

DIOPT Version :9

• Sequence 1: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_001309665.1
• Gene: nhr-93 / 13212318
• WormBaseID: WBGene00003683
• Length: 414
• Species: Caenorhabditis elegans
• Alignment Length: 521
• Identity: 112/521 - (21%)
• Similarity: 180/521 - (34%)
• Gaps: 172/521 - (33%)

  Fly    14 HIKEEVKPDISQLNDSNNSSFSPKAESPVPFMQAMSMVHVLPGSNSASSNNNSAGDAQMAQAPNS 78
            ||.|:.|      |..|...:..:.|...   :.|.:|:....||...|.||
 Worm     4 HIIEDCK------NTRNFRVYQQRLEDNT---RHMEVVYCNTFSNVWMSENN------------- 46

  Fly    79 AGGSAAAAVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREN 143
                    |:.:......|..||  |.:|...|.|.|..|.:|:|||.||:|.........| ..
 Worm    47 --------VEIKLISTKILKPSK--CMVCARPAHGYHCDVTTCKGCKSFFRRMYLLRSEIKC-SG 100

  Fly   144 RNCIIDKRQR----NRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGG 204
            ||...|.::|    .||:.|||:|||..||..||:
 Worm   101 RNDCFDLKKRIEPLLRCRSCRYRKCLLVGMNPEAL------------------------------ 135

  Fly   205 SSSQGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEA----EQRAE------------TQ 253
                                     :.|.::::.||.::|.:    :|:.|            |.
 Worm   136 -------------------------VFNMLTKEDSIIKVINSLDYLDQKVEKFRLCAYNPDWATM 175

  Fly   254 CGDRALTFL-----------RVGPYS--TVQPDYKGAVSALCQVVNK--------QLFQM---VE 294
            .|   |..|           :.||:.  .:.||::.|.....:.:..        :||.:   :|
 Worm   176 GG---LADLIKNNGKLNQVDKYGPFPGWPLDPDHEFAHQNFYRDLKAFSTDRKEWRLFNLLASIE 237

  Fly   295 YARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGL 359
            |::....|..:.|.||:.:||        ...|.||.:|.                ||..    |
 Worm   238 YSKTFLFFQNLDLPDQLRVLK--------HTAAGCSSLSC----------------SFFT----L 274

  Fly   360 QPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIK 424
            :.:...:.|.....|.|.:..|. |:|..::.    .|:|:.....|...|||:.|.||.|.|:.
 Worm   275 RQKYEDIRQPDGTQRPSKLAPGY-ALFSALIG----PMRRVGTQYFEYLLLKALYLCNPAIPGLT 334

  Fly   425 SRAEIEMCRE-KVYA-CLDEHCRLEHPGDDGRFAQLLLRLPAL--RSISLKCQDHLFLFRITSDR 485
            .:|:..:.|| ::|: .|.|.|...:.....:|..::..:..|  :..:||....|.|..:.|..
 Worm   335 VQAQHVLERERRLYSNILMEFCLRNYSNGATKFVDVIQLIGVLEWQQKNLKDLHVLLLTPVLSQL 399

  Fly   486 P 486
            |
 Worm   400 P 400

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	30/79 (38%)
		NR_LBD_RXR_like	237..480	CDD:132741	61/286 (21%)
nhr-93	NP_001309665.1	ZnF_C4	61..133	CDD:197701	29/74 (39%)
		HOLI	230..378	CDD:214658	41/180 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160158253
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.840