DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr4 and nr5a2

DIOPT Version :9

Sequence 1:NP_001259161.1 Gene:Hr4 / 31162 FlyBaseID:FBgn0264562 Length:2123 Species:Drosophila melanogaster
Sequence 2:NP_001011100.1 Gene:nr5a2 / 496513 XenbaseID:XB-GENE-478074 Length:501 Species:Xenopus tropicalis


Alignment Length:674 Identity:161/674 - (23%)
Similarity:240/674 - (35%) Gaps:229/674 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   868 LPPGQLQALNLSAQQQQWGSSNSTGLGGVGGGMGGRNLEAPHEPTD-------------EDEQPL 919
            ||..:.:||.||....:.|                      |.|.:             ::|...
 Frog     2 LPKVEPEALGLSRSHGEQG----------------------HMPENMQASQFKMMGYSYDEELEE 44

  Fly   920 VCMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQ 984
            :|.:|.||.:|.|||::|||.|||||||||||.:.|||:.:.:|:|.|.||.||.||||:||:..
 Frog    45 MCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQSCQIDKTQRKRCPYCRFQKCLSV 109

  Fly   985 GMVLQAVREDRMPGGRNS-GAVYNLYKVKYKKHKKTNQKQQQQAAQQQQQQAAAQQQHQQQQQHQ 1048
            ||.|:|||.|||.||||. |.:|        |..:..::|::...:....:..|..|..|.....
 Frog   110 GMKLEAVRADRMRGGRNKFGPMY--------KRDRALKQQKKALIRANGLKLEAMGQVIQSIPTD 166

  Fly  1049 QHQQHQQQQLHS-----PLHHHHHQGHQSHHAQQQHHPQLSPHHLLSPQQQQLAAAVAAAAQHQQ 1108
            .......|.:||     ||:|                                            
 Frog   167 LTISSAIQNIHSASKGLPLNH-------------------------------------------- 187

  Fly  1109 QQQQQQQQQQQAKLMGGVVDMKPMFLGPALKPELLQAPPMHSPAQQQQQQQQQQQQQQASPHLSL 1173
                       |.|.....|..|....|     :..|.|                     ||.||
 Frog   188 -----------AALPPSDYDRSPFVTSP-----ISMAMP---------------------PHGSL 215

  Fly  1174 SSPHQQQQQQQGQHQNHHQQQGGGGGGAGGGAQLPPHLVNGTILKTALTNPSEIVHLRHRLDSAV 1238
                      ||.....|               .|...:.........::|..|:...: :||..
 Frog   216 ----------QGYQAYGH---------------FPSRAIKSEYPDPYTSSPESIMGYSY-MDSYQ 254

  Fly  1239 SSSKDRQISYEHALGMIQTLIDCDAMED------IATL--PHFSEFLEDKSEISEKLCNIGDSIV 1295
            |||..   :..|   :|..|:.|:..|.      :|.|  ...:....||......:|.:.|..:
 Frog   255 SSSPS---NIPH---LIVELLKCEPDEPQVQGKIMAYLQQEQANRSKHDKLNTFGLMCKMADQTL 313

  Fly  1296 HKLVSWTKKLPFYLEIPVEIHTKLLTDKWHEILILTTAAYQALHGKRRGEGGGSRHGSPASTPLS 1360
            ..:|.|.:...|:.|:.|:...|||.:.|.|:|||.....|.||||   ||.           :.
 Frog   314 FSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQVLHGK---EGS-----------IL 364

  Fly  1361 TPTGTPLSTPIPSPAQPLHKDDPEFVSEVNSHLSTLQTCLTTLMGQPIAMEQLKLDVGHMVDKMT 1425
            ..||..:             |....|::..:.|:.|                    :.|..|.:.
 Frog   365 LVTGQQV-------------DYSVIVTQAGATLNNL--------------------MSHAQDLVA 396

  Fly  1426 QITIMFRRIKLKMEEYVCLKVYIL--LNKAEVE----LESIQERYVQVLRSYLQNSSPQNPQARL 1484
            ::    |.::..:.|:||||..:|  |:...:|    :|.:||:....|..|...:.||... :.
 Frog   397 KL----RSLQFDLREFVCLKFLVLFSLDVKNLENYQLVEGVQEQINAALLDYTMCNYPQQTD-KF 456

  Fly  1485 SELLSHIPEIQAAASLLLESKMFY 1508
            .:||..:|||: |.||..|..::|
 Frog   457 GQLLLRLPEIR-AISLQAEEYLYY 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr4NP_001259161.1 NR_DBD_DHR4_like 913..1002 CDD:143542 51/101 (50%)
NR_LBD_DHR4_like 1256..1515 CDD:132751 63/267 (24%)
nr5a2NP_001011100.1 NR_DBD_Lrh-1_like 46..138 CDD:143541 54/99 (55%)
NR_LBD_Lrh-1 261..501 CDD:132754 65/275 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D278717at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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