DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr4 and Nr5a1

DIOPT Version :9

Sequence 1:NP_001259161.1 Gene:Hr4 / 31162 FlyBaseID:FBgn0264562 Length:2123 Species:Drosophila melanogaster
Sequence 2:NP_001303616.1 Gene:Nr5a1 / 26423 MGIID:1346833 Length:462 Species:Mus musculus


Alignment Length:616 Identity:133/616 - (21%)
Similarity:206/616 - (33%) Gaps:205/616 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   913 DEDEQPLVCMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCR 977
            |||...| |.:|.||.:|.|||::|||.|||||||||||.:.|||....:|:|.|.||.||.:||
Mouse     6 DEDLDEL-CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCR 69

  Fly   978 FKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKTNQKQQQQAAQQQQQQAAAQQQHQ 1042
            |:||:..||.|:|||.|||.||||.      :...||:.:...|:::.|......:.........
Mouse    70 FQKCLTVGMRLEAVRADRMRGGRNK------FGPMYKRDRALKQQKKAQIRANGFKLETGPPMGV 128

  Fly  1043 QQQQHQQHQQHQQQQLHSPLHHHHHQGHQSHHAQQQHHPQLSPHHLLS-PQQQQL------AAAV 1100
            ...............||:|                      .|..|:| |....|      :..:
Mouse   129 PPPPPPPPDYMLPPSLHAP----------------------EPKALVSGPPSGPLGDFGAPSLPM 171

  Fly  1101 AAAAQHQQQQQQQQQQQQQAKLMGGVVDMKPMFLGPALK---PELLQAPPMHSPAQQQQQQQQQQ 1162
            |....|             ..|.|   .:.|.|....:|   ||...:||               
Mouse   172 AVPGPH-------------GPLAG---YLYPAFSNRTIKSEYPEPYASPP--------------- 205

  Fly  1163 QQQQASPHLSLSSPHQQQQQQQGQHQNHHQQQGGGGGGAGGGAQLPPHLVNGTILKTALTNPSEI 1227
              ||..|..|...|.                        .||..:|.     .||:.....|.| 
Mouse   206 --QQPGPPYSYPEPF------------------------SGGPNVPE-----LILQLLQLEPEE- 238

  Fly  1228 VHLRHRLDSAVSSSKDRQISYEHALGMIQTLIDCDAMEDIATLPHFSEFLEDKSEISEKLCNIGD 1292
            ..:|.|:                                :..|...::...|:......||.:.|
Mouse   239 DQVRARI--------------------------------VGCLQEPAKSRSDQPAPFSLLCRMAD 271

  Fly  1293 SIVHKLVSWTKKLPFYLEIPVEIHTKLLTDKWHEILILTTAAYQALHGKRRGEGGGSRHGSPAST 1357
            .....:|.|.::...:.|:.|.....||.:.|.|:|:|.....|..:||                
Mouse   272 QTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVLDHIYRQVQYGK---------------- 320

  Fly  1358 PLSTPTGTPLSTPIPSPAQPLHKDDPEFVSEVNSHLSTLQTCLTTLMGQPIAMEQLKLDVGHMVD 1422
                                                   :..:..:.||.:.:..:.:..|.::.
Mouse   321 ---------------------------------------EDSILLVTGQEVELSTVAVQAGSLLH 346

  Fly  1423 KMT----QITIMFRRIKLKMEEYVCLKVYIL-------LNKAEVELESIQERYVQVLRSYLQNSS 1476
            .:.    ::.:....::|..:|:||||..||       ||...: ::..||:....|..|.....
Mouse   347 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSL-VKDAQEKANAALLDYTLCHY 410

  Fly  1477 PQNPQARLSELLSHIPEIQAAASLLLESKMF 1507
            |.... :..:||..:.|::|   |.:::|.:
Mouse   411 PHCGD-KFQQLLLCLVEVRA---LSMQAKEY 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr4NP_001259161.1 NR_DBD_DHR4_like 913..1002 CDD:143542 53/88 (60%)
NR_LBD_DHR4_like 1256..1515 CDD:132751 42/263 (16%)
Nr5a1NP_001303616.1 NR_DBD_Lrh-1_like 13..105 CDD:143541 52/97 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 117..149 3/53 (6%)
MISS <147..217 CDD:292450 21/124 (17%)
NR_LBD_SF-1 237..460 CDD:132755 45/294 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D278717at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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