DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr4 and Nr6a1

DIOPT Version :9

Sequence 1:NP_001259161.1 Gene:Hr4 / 31162 FlyBaseID:FBgn0264562 Length:2123 Species:Drosophila melanogaster
Sequence 2:NP_034394.1 Gene:Nr6a1 / 14536 MGIID:1352459 Length:495 Species:Mus musculus


Alignment Length:722 Identity:164/722 - (22%)
Similarity:268/722 - (37%) Gaps:268/722 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   800 SGGGSVSGGGVGGPLTPSSVAPQNNEEAAQLLLSLGQTRIQDMRSRPHPFRTPHALNMERLWAGD 864
            ||||  .|||..|.|.|.:..|                        |.|        .......:
Mouse     9 SGGG--GGGGSAGFLEPPAALP------------------------PPP--------RNGFCQDE 39

  Fly   865 YSQLPPGQLQALNLSAQQQQWGSSNSTGLGGVGGGMGGRNLEAPHEPTDEDEQPLVCMICEDKAT 929
            .::|.||..            |.::|..|     |.|...:..|    |:..:...|:||.|:||
Mouse    40 LAELDPGTN------------GETDSLTL-----GQGHIPVSVP----DDRAEQRTCLICGDRAT 83

  Fly   930 GLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVRED 994
            |||||||:||||||||||::.|:|||.|..|..|.:::.|||||||||..||::.||..:|:|||
Mouse    84 GLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIRED 148

  Fly   995 RMPGGRNS--GAVYNLYKVKYKKHKKTNQKQQQQAAQQQQQQAAAQQQHQQQQQHQQHQQHQQQQ 1057
            .||||||.  |.|                    |.::::.::..:.|:.:::             
Mouse   149 GMPGGRNKSIGPV--------------------QISEEEIERIMSGQEFEEE------------- 180

  Fly  1058 LHSPLHHHHHQGHQSHHAQQQHHPQLSPHHLLSPQQQQLAAAVAAAAQHQQQQQQQQQQQQQAKL 1122
                      ..|.|:|....|.   ||.:..|...|....:..::::..:              
Mouse   181 ----------ANHWSNHGDSDHS---SPGNRASESNQPSPGSTLSSSRSVE-------------- 218

  Fly  1123 MGGVVDMKPMFLGPALKPELLQAPPMHSPAQQQQQQQQQQQQQQASPHLSLSSPHQQQQQQQGQH 1187
            :.|.:..:..::|       :..||.:                |..|||...|.|          
Mouse   219 LNGFMAFRDQYMG-------MSVPPHY----------------QYIPHLFSYSGH---------- 250

  Fly  1188 QNHHQQQGGGGGGAGGGAQLPPHLVNGTILKTALTNPSEIVHLRHRLDSAVSSSKDRQISYEHAL 1252
                            ...|||.                            :.|.|.| ||    
Mouse   251 ----------------SPLLPPQ----------------------------ARSLDPQ-SY---- 266

  Fly  1253 GMIQTLIDCDAMEDIATLPHFSE--FLEDKSEISEKLCNIGDSIVHKLVSWTKKLPFYLEIPVEI 1315
            .:|..|:..:.:|.:.| |...|  :...::|:...||.:.|.::.:.::|.|||||:.|:.::.
Mouse   267 SLIHQLMSAEDLEPLGT-PMLIEDGYAVTQAELFALLCRLADELLFRQIAWIKKLPFFCELSIKD 330

  Fly  1316 HTKLLTDKWHEILILTTAAYQALHGKRRGEGGGSRHGSPASTPLSTPTGTPLSTPIPSPA-QPLH 1379
            :|.||:..|.|:::|::.   .::.|:       ..|..|..           |...||: :.||
Mouse   331 YTCLLSSTWQELILLSSL---TVYSKQ-------IFGELADV-----------TAKYSPSDEELH 374

  Fly  1380 KDDPEFVSEVNSHLSTLQTCLTTLMGQPIAMEQLKLDVGHMVDKMTQITIMFRRIKLKMEEYVCL 1444
            :...|                        .||        :::::..:...|.::|:..|||.|:
Mouse   375 RFSDE------------------------GME--------VIERLIYLYHKFHQLKVSNEEYACM 407

  Fly  1445 KVYILLNK------AEVELESIQERYVQVLRSYLQNSSPQNPQARLSELLSHIPEIQAAASLLLE 1503
            |....||:      :..:||.:.:||..:.:.:.:......|. |..:|:..:|||:..|     
Mouse   408 KAINFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKYTHQPN-RFPDLMMCLPEIRYIA----- 466

  Fly  1504 SKMFYVP 1510
            .||..||
Mouse   467 GKMVNVP 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr4NP_001259161.1 NR_DBD_DHR4_like 913..1002 CDD:143542 53/88 (60%)
NR_LBD_DHR4_like 1256..1515 CDD:132751 57/264 (22%)
Nr6a1NP_034394.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34 13/58 (22%)
NR_DBD_GCNF_like 67..156 CDD:143543 53/88 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..165 12/39 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 177..214 8/62 (13%)
Sufficient for interaction with UIMC1 187..268 24/179 (13%)
NR_LBD_DHR4_like 271..482 CDD:132751 57/263 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849852
Domainoid 1 1.000 108 1.000 Domainoid score I6489
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5991
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D278717at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_108526
Panther 1 1.100 - - LDO PTHR48092
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4605
SonicParanoid 1 1.000 - - X4570
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.830

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