DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ocrl and Sh2d1b

DIOPT Version :9

Sequence 1:NP_001259153.1 Gene:Ocrl / 31157 FlyBaseID:FBgn0023508 Length:850 Species:Drosophila melanogaster
Sequence 2:XP_038947337.1 Gene:Sh2d1b / 501869 RGDID:1563935 Length:136 Species:Rattus norvegicus


Alignment Length:69 Identity:15/69 - (21%)
Similarity:24/69 - (34%) Gaps:26/69 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   443 CDRVLWKGTRIEQLAYNSIMEIRQSDHKP--------------VYAVFQVKVKTRDEVKYKRVQE 493
            |:.:|.||      ..:....||.|:..|              .|.:|      |::..|.|:|:
  Rat    15 CEALLLKG------GADGNFLIRDSESVPGALCLCVSYKKLVYSYRIF------REKHGYYRIQD 67

  Fly   494 EVLK 497
            ...|
  Rat    68 PTRK 71

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OcrlNP_001259153.1 PH-like 23..163 CDD:302622
INPP5c_INPP5B 185..478 CDD:197327 10/48 (21%)
RhoGAP_OCRL1 614..823 CDD:239845
Sh2d1bXP_038947337.1 SH2_SAP1 1..>77 CDD:198205 15/69 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5411
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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