DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ocrl and synj1

DIOPT Version :9

Sequence 1:NP_001259153.1 Gene:Ocrl / 31157 FlyBaseID:FBgn0023508 Length:850 Species:Drosophila melanogaster
Sequence 2:XP_005155414.1 Gene:synj1 / 337236 ZFINID:ZDB-GENE-030131-9180 Length:1612 Species:Danio rerio


Alignment Length:368 Identity:122/368 - (33%)
Similarity:178/368 - (48%) Gaps:56/368 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 EYIVYKDIIIYCATWNVNN----KTCSDSNNPLRAWLACSEK-------------PPDIYAIGLQ 225
            :|...|.|.:...|||||.    ::.:..|:.|..||..:.|             |.||:|||.:
Zfish   531 KYTRPKKIRVCVGTWNVNGGKQFRSIAFRNHTLNDWLLDAPKKAGHPEFQDVKNNPVDIFAIGFE 595

  Fly   226 ELDTPTKAMLNSTQVQAI----EKQWIDKMMDSVHPDVEYEILMSHRLVATMLTVIVRKQLRQHI 286
            |:     ..||:..:.:.    :|.|..::..::..|..|.:|.|.:||...|.|.:|.|....|
Zfish   596 EM-----VELNAGNIVSASTTNQKLWAAELQKNISRDQRYVLLASEQLVGVCLFVFIRPQHAPFI 655

  Fly   287 IRCRPKSVARGIFNTLGNKGGVAISLQLNEGNICFVNSHLAAHMGYVEERNQDYNAIVEGIRFDD 351
            ......:|..|:....||||||||.:..:..:||||.||.||....|:|||.|||.|...:.|..
Zfish   656 RDVAVDTVKTGMGGATGNKGGVAIRMLFHTTSICFVCSHFAAGQSQVKERNDDYNEIARKLSFPM 720

  Fly   352 GRTISDHDHIFWVGDLNYRIQEPPGQQRPGPLSDAQTYELLLQYDQLRQEMRRGKCFEGYTEGEI 416
            ||.:..||::||.||.||||..|  .:....|...|.::.|:..|||.::...|:.|.|:.||::
Zfish   721 GRLLYSHDYVFWCGDFNYRINIP--NEEVKELIRQQNWDALIGGDQLVEQKNAGQVFRGFIEGKL 783

  Fly   417 KFRPTYKYDPGTDNYDSSEKQRAPAYCDRVLWK------------------GTRIEQ-------- 455
            .|.||||||..:::||:|||.|.||:.||||||                  |..:.:        
Zfish   784 DFAPTYKYDLFSEDYDTSEKCRTPAWTDRVLWKRRKWNFDKTAEELELNVVGAPVNEEEQYPWSP 848

  Fly   456 --LAYNSIMEIRQSDHKPVYAVFQVKVKTRDEVKYKRVQEEVL 496
              |.|....|::.|||:||.|:..|.:...|.....:|.:||:
Zfish   849 GDLKYYGRAELKTSDHRPVVAIIDVDILEVDPEARHQVYKEVI 891

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OcrlNP_001259153.1 PH-like 23..163 CDD:302622
INPP5c_INPP5B 185..478 CDD:197327 115/341 (34%)
RhoGAP_OCRL1 614..823 CDD:239845
synj1XP_005155414.1 Syja_N 60..340 CDD:280532
INPP5c_Synj1 538..873 CDD:197332 115/341 (34%)
RRM_SF 872..1010 CDD:302621 5/20 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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