DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ocrl and Synj2

DIOPT Version :9

Sequence 1:NP_001259153.1 Gene:Ocrl / 31157 FlyBaseID:FBgn0023508 Length:850 Species:Drosophila melanogaster
Sequence 2:NP_001106824.1 Gene:Synj2 / 20975 MGIID:1201671 Length:1479 Species:Mus musculus


Alignment Length:630 Identity:165/630 - (26%)
Similarity:256/630 - (40%) Gaps:163/630 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 VKQELKKRESEYIVYKDIIIYCATWNVNNKTCSDSN----NPLRAWLACSEK------------P 216
            :.:.:.:|:||:..:|.|.|...|||||......||    ..|..||..:.:            |
Mouse   513 ILKAMTERQSEFTNFKRIQIAVGTWNVNGGKQFRSNLLGTAELTDWLLDAPQLSGAVDSQDDGSP 577

  Fly   217 PDIYAIGLQEL-DTPTKAMLNSTQVQAIEKQWIDKMMDSVHPDVEYEILMSHRLVATMLTVIVRK 280
            .|::|||.:|: :.....::|::...  .|.|.:::..::.....|.:|.|.:||...|.:.||.
Mouse   578 ADVFAIGFEEMVELSAGNIVNASTTN--RKMWGEQLQKAISRSHRYILLTSAQLVGVCLYIFVRP 640

  Fly   281 QLRQHIIRCRPKSVARGIFNTLGNKGGVAISLQLNEGNICFVNSHLAAHMGYVEERNQDYNAIVE 345
            .....|......:|..|:....||||.|.|..||:..:.|||.|||.|....|:|||:||..|..
Mouse   641 YHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQLHSTSFCFVCSHLTAGQSQVKERNEDYREITH 705

  Fly   346 GIRFDDGRTISDHDHIFWVGDLNYRIQEPPGQQRPGPLSDAQTYE------------LLLQYDQL 398
            .:.|..||.|..||::||.||.||||.              .|||            .|:::|||
Mouse   706 KLSFPSGRNIFSHDYVFWCGDFNYRID--------------LTYEEVFYFVKRQDWKKLMEFDQL 756

  Fly   399 RQEMRRGKCFEGYTEGEIKFRPTYKYDPGTDNYDSSEKQRAPAYCDRVLW--------------- 448
            :.:...||.|:.:.||.:.|.||||||.|:..||:|:|.|.||:.|||||               
Mouse   757 QLQKSSGKIFKDFHEGAVNFGPTYKYDVGSAAYDTSDKCRTPAWTDRVLWWRKKHPYDKTAGELN 821

  Fly   449 -----------------KGTRIEQLAYNSIMEIRQSDHKPVYAVFQVKVKTRDEVKYKRVQEEV- 495
                             .||    |.|....|::.|||:||.|:.:|:|:..|....:||.:|| 
Mouse   822 LLDSDLDGDPQIRHTWSPGT----LKYYGRAELQASDHRPVLAIVEVEVQEVDVGARERVFQEVS 882

  Fly   496 -----LKAV-----------DKRENDNQPQINVEKTVIDFGT---VRFNEPSTRDFNVYNNCPLP 541
                 |.|.           :|.|.....:..:.:|:.::||   ||.|:..           :.
Mouse   883 SVQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGNYGTIILVRINQGQ-----------ML 936

  Fly   542 VDFSFKEKDIHAICEPWLHVD------------PRQDSLLIDSARSIRLKMNANVRTIAGLLRKI 594
            |.|:    |.|:.... |.||            |:....| :..|...|:...::..::......
Mouse   937 VTFA----DSHSALSV-LDVDGMKVKGRAVKIRPKTKDWL-EGLREELLRKRDSMAPVSPTANSC 995

  Fly   595 RASDNFDILILHVENGRDIFITVTGDYQPSCFGLSMETMCRTDRPL---SEYSQDQIKQLMND-- 654
            ...:|||...|..|:..|: :....||....||          :|:   ||...|.....|:.  
Mouse   996 LLEENFDFSSLDYESEGDV-LEEDEDYLVDGFG----------QPVVSDSELGGDNSSDTMSSLT 1049

  Fly   655 ------------ESPEYR-----VTMPREFFLLIDYLYRQGSKQV 682
                        :.|.|:     ||:.:|..:..::.:|..|:.:
Mouse  1050 PASKSPALAKKKQHPTYKDDAHLVTLKQELEVAGNFRHRSPSRSL 1094

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OcrlNP_001259153.1 PH-like 23..163 CDD:302622
INPP5c_INPP5B 185..478 CDD:197327 111/353 (31%)
RhoGAP_OCRL1 614..823 CDD:239845 16/91 (18%)
Synj2NP_001106824.1 Syja_N 61..342 CDD:280532
EEP 530..861 CDD:294334 110/350 (31%)
DUF1866 872..1008 CDD:286093 29/152 (19%)
CEND1 1290..>1405 CDD:292305
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5411
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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