DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF2Bepsilon and gmppb

DIOPT Version :9

Sequence 1:NP_569961.2 Gene:eIF2Bepsilon / 31156 FlyBaseID:FBgn0023512 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001003491.2 Gene:gmppb / 445097 ZFINID:ZDB-GENE-040801-234 Length:360 Species:Danio rerio


Alignment Length:456 Identity:88/456 - (19%)
Similarity:164/456 - (35%) Gaps:116/456 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VQAVLIADNNVWNFKPLSDEGSTALLPLVNVRMLDYALMALNRSGVEEVFVYTSLYRSSIREHIR 73
            ::|:::........:||:......|:...|..:|.:.:.||.::||..|.:..|.....:...:|
Zfish     1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPILLHQVEALVKAGVRHVILAVSYMSELLEREMR 65

  Fly    74 A-----GIATDAAWSFKMTVHVIGGEGCRCFGDAMRDL--DNKALIRGHFILLGADTVTNADLRP 131
            |     ||..    |.......:|..|.....   |:|  ||:.    .|.:|.:|.:.:.....
Zfish    66 AQEQRLGIKI----SLSHEKEPLGTAGPLALA---RELLTDNQE----PFFVLNSDVICDFPFDD 119

  Fly   132 VLEQHKRQAKFDKGTAATLVFKECANNVRTGNEVLIAVDRRNDRLHYHQRLRMHHKENRYQLPLD 196
            :|:.|::.     |...|:|..:.....:.|   ::..:..:.|:|            |:.....
Zfish   120 MLKFHQQH-----GREGTIVVTKVEEPSKYG---VVVYEGDSGRIH------------RFVEKPQ 164

  Fly   197 VFLGNSCVALHHNLLDPQIAIGSPSMLSLFNDNFDFQTRDDFVRGLLINEELLDSRIYVALLPAA 261
            ||:.|.        ::..:.|.||:||                |.:.:....::..|:..:....
Zfish   165 VFVSNK--------INAGMYIFSPAML----------------RRIQLQPTSIEKEIFPVMAEEG 205

  Fly   262 Q-YAHKVNNWPAYQLVSRDIINRWAYPFVPDIGLYK--LQQEYVFHKDNIYKSPEAHVSKVALLQ 323
            | ||.::..:             |.     |||..|  |....::.:....::||...:....|.
Zfish   206 QLYAMELQGF-------------WM-----DIGQPKDFLTGMCMYLQSVRQQAPERLRAGPGFLG 252

  Fly   324 NVVIEAGSHVDSGSVISDSVIGANCRIGKNCRLTNAFLMADVTVMDNCRLEHCVVGEGAIIN--- 385
            ||:::           ..:|||.||.||.|..:.     |.|.:.|..|::.|.:.:||.|.   
Zfish   253 NVLVD-----------PTAVIGQNCTIGPNVTIG-----AGVVLEDGVRVKRCTILKGAHIRSHS 301

  Fly   386 --EDCDVSAGCVLGAKSVLPAKKTLAKTLITRTPSRRRSDDEVVVELKSIGPHAYIVSDLTTGDP 448
              |.|.|.....:|....:.....|.:.:|.        :||:.:...::.||    ..:|...|
Zfish   302 WLESCIVGWSSSVGQWVRMENVTVLGEDVIV--------NDELYINGANVLPH----KSITDSVP 354

  Fly   449 E 449
            |
Zfish   355 E 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF2BepsilonNP_569961.2 eIF-2B_epsilon_N 9..223 CDD:133040 41/220 (19%)
GCD1 22..409 CDD:224129 78/401 (19%)
LbetaH 326..397 CDD:294107 19/75 (25%)
W2_eIF2B_epsilon 499..659 CDD:211396
gmppbNP_001003491.2 GCD1 1..352 CDD:224129 86/451 (19%)
M1P_guanylylT_B_like_N 1..233 CDD:133047 54/304 (18%)
LbetaH 255..334 CDD:294107 22/102 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1208
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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